DreALTA0009705-1/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000076025 | dgkzb
Description
diacylglycerol kinase, zeta b [Source:ZFIN;Acc:ZDB-GENE-111104-4]
Coordinates
chr25:7703131-7703369:+
Coord C1 exon
chr25:7703131-7703199
Coord A exon
NA
Coord C2 exon
chr25:7703274-7703369
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAC
5' ss Score
5.99
3' ss Seq
TAATGTTTCACTCTAAGCAGGAC
3' ss Score
5.03
Exon sequences
Seq C1 exon
GCATCACTGAAGAGCAGTAAAAGAAGGAAGAGAACGTCTCTGAAGGCCAAACCCAGCAAGAAATTAGAG
Seq A exon
NA
Seq C2 exon
GACGGCAAATGGAGAAACTTCGTGGTGAGAGCGATTCCTTCCCAGCACATGAAGCCTCTGCTGGTGTTCGTCAATCCGAAGAGTGGTGGAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076025-9-14,9-13,9-12-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.739 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078119=DAGK_cat=PU(10.4=40.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGTCTCTGAAGGCCAAACC
R:
GCTTCATGTGCTGGGAAGGAA
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]