RnoALTA0011999-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13103803-13106057:+
Coord C1 exon
chr20:13103803-13103930
Coord A exon
NA
Coord C2 exon
chr20:13105943-13106057
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
TTGCCCGTGTCCTCTCTCAGGAT
3' ss Score
10
Exon sequences
Seq C1 exon
GAGAACCTGGTCTTCGTCGTGGGCAAGCTGGACGGGCTGACGGTCGTAGGAGCACGCAGACATAATGCAGATGACATTGTGGCTACTGCCCTGGCTGTGGAACCCATGAAGTTTGTCTACAGAGGCAG
Seq A exon
NA
Seq C2 exon
GATCGCCGTGTTCTCTGTGACTGTTCTGCACGATGACCGGATTGTCTTGGTGGCCGAACAGCGGCCCGACTCTTCGGAGGAAGACAGCTTCCAGTGGATGAGCCGTGTGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212-29-32,29-31-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(3.4=37.2)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACCTGGTCTTCGTCGTG
R:
CAATCCGGTCATCGTGCAGAA
Band lengths:
172-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]