HsaALTA1038901-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000160305 | DIP2A
Description
disco interacting protein 2 homolog A [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr21:46546915-46549885:+
Coord C1 exon
chr21:46546915-46547042
Coord A exon
chr21:46549771-46549831
Coord C2 exon
chr21:46549832-46549885
Length
61 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
TTCCATGTCTCATCCCGCAGGAT
3' ss Score
11.13
Exon sequences
Seq C1 exon
GACAACCTGGTCTTCATCGTGGGCAAACTGGACGGGCTGATGGTCACTGGAGTTCGCAGACACAATGCAGATGACGTTGTGGCCACCGCACTGGCCGTGGAGCCCATGAAGTTTGTCTACAGAGGCAG
Seq A exon
GATCGCTGTGTTCTCTGTGACCGTGCTGCACGACGACCGGATTGTCCTGGTGGCTGAGCAG
Seq C2 exon
CGGCCGGATGCCTCGGAGGAGGACAGCTTCCAGTGGATGAGCCGTGTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305-55-54,55-53-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(3.4=37.2)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTCACTGGAGTTCGCAG
R:
GCTCATCCACTGGAAGCTGTC
Band lengths:
132-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains