HsaINT1011085 @ hg38
Intron Retention
Gene
ENSG00000160305 | DIP2A
Description
disco interacting protein 2 homolog A [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr21:46546915-46549885:+
Coord C1 exon
chr21:46546915-46547042
Coord A exon
chr21:46547043-46549770
Coord C2 exon
chr21:46549771-46549885
Length
2728 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
TTCCATGTCTCATCCCGCAGGAT
3' ss Score
11.13
Exon sequences
Seq C1 exon
GACAACCTGGTCTTCATCGTGGGCAAACTGGACGGGCTGATGGTCACTGGAGTTCGCAGACACAATGCAGATGACGTTGTGGCCACCGCACTGGCCGTGGAGCCCATGAAGTTTGTCTACAGAGGCAG
Seq A exon
GTGATGCGCTGCGGACCCCCACGCCGGGAGTAGATTCCTTCATTTGCAGCTCGGGAAGTCTTTGTGCAGTAGATGGAAAGCCCAGCAAACTTGAATTCACAAAGCCTAAAAATTGTTGTACATCAGAAAACTCCTAAAGTAAAAGGAAAATATTTGCAGCAATGATACCAGAGTTAATATCCTTACTGTCCAAAGAGTTCCTTGGATTCCTTAAGAAAATAAGGTTTTGATGTAAAATTTGGGGCAAAGGCTCAAGGGGACAAATCAGGGAGGGAAGAATTGAGTAAAGCAAAGGAGAAATGGGTCTAAGTTCCTAATAACCTTGGAATGTGAATTAAAACAGAAAAGTGCCATTTTCTCTGCGAGACACATGACACCCTCCATTGCCTCTGGAATAAAAATCAACTCAACTTTTCTACATGTGTAAAGCAAGGACCTTAGAGATTCTCTTGAGCAAATAATAGACCTCTGGGCCTATGCCCCTGGGCACAGGGGCCAGGAAGAGAATTTTGCTTCTTCTACTCCCAAGCTCCTTGTCTGGGAGGAAGCTCTTCCCCTAACTGGTCCACTCAACCAGCTGCCTTTTTAAATTTTATTTTTCTCAAGGGGGTGCCTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGATAGGGTCTCACTCTGTTGCCCATCCAGGCTGGAGTGCAGTAGTGTGACCATAACTCACTGGAGCCTCTACCTCCTGGGCTTCAAGCAGTCCTCTTACCGCACCTCCTGAGCAGCTGGGACCACAGACATGCACCCCACGCCTGGCTAATTTTTTAATTTTTTTGTAGAGATAGGGTCTCACTATGTTGCTCAAGCTGCTCTCGAACTCCTGGGCTCAAGCAATCCTCCCTCCTTGGCCTCCCAAACTGCTGGGATTACAGGTGTCAGCCAATGTGCCTGGCCAAGGATGTGCCTTTTGTTACTCAAACTAAGGTACTTGGGAGCCAGGTCAGACCCTGCCTTTGAGTAGCCCTTAAAGCAATCGTGAGGGGATTCTGCAAAGTGGTGTGTCATCATGGTTAGTCTTGAGGAAAAAGCCCAGAGGATGGACAACAGAGAAGGTGGGAGATTGCTCAGGGGGCTGGGAAGGGCAGGCTGTGCTCATGCATGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGCGCCTGCGTGCAGGGGGAGGGTGGCACAGCCAGGGTCATGACCCCCCTCACAGCAGAAATGGGGGACACATTGGGCAGGTGTCCTTAGGGATAACATCAAGGTAGCCCAAACCCTGCTTTGAGGTGGAGCAGGGAGACCACCCCCTCGCAGGGCCACCTGTACCTGATGGTGACTGCGTCTGCAGGCAGGATAGCCTCCCTGTCCCCACTAGGGAAGAGCTGAGGAATACAGGAGCTTGGAAGTGGAACCACAACCAATTGAGAGTATATGTGCCATTGGAAGAAGAGCAATAGAAGATTTGCAACATGAACTAAGATCAAGAAATGCTAACAAAGTAATTGTTCAAAGAACACAGTAGATGGAATACATAAAATGGATACAGCTAGAGAACAAGTAGAGAAGGTGGAAAGTCAGATTAGGGAACTACTCTGGAAGTAAAATAGGAACTTTAAAGGAACTATTAAGAGAGATGGGAGAGAATAAGGGCTGGTGTCCAGATAGCAGACTCAAGGAGAAGGGATATGTTTAGTGGTGGTTAGGGATTGTCTGAGGAAGCAGGTGGTTGGGGTTCTCTGGACTGGGAAGTGGTCCACAGAGGGCCCCATGGCATGTTGAGCTTATCTGTATTCTCACCATGGACCACACAAAAGCCAAGCAAAACACATCAGACTTCCCCACAGTGGAACTGGCACAAGATAACAGTGCACCCAATTTATCCAAATTGTCACTTTATTGTGCAGTTGTAATAAAAAATATTTTTAAGCATGTAAGTTTCAGAAGTTTTAACACACAGAGGTCCGTACTGAAAACAGTTTTGGTCAAGATACTAAGAGAAATAAATTCAAGATGTGCTATAAGATGTATGAGAGTAAGGAGAACTCAGTACTAGGTGAGGTCTGTTGTGTAAATTGTGTGTGTGTGTGTGTACACACACACCAGTCAAGTCAAAGGAAAGGACAAGAGACGGTATATCCATAATGTCCCAGAGTCAGAATGGTAGACATCCTAACATGATGGGTTTGGTGGGGAGACCATCTTCTTACTTTATGAAAGAAAAGACAAAGATATCAACTCAAAGTCTAAAAGAAGGAAAAGGCAACACAGAAAAAAGGAGGACATGTTGAAATTTTTAAGATAGTAAAAACACGTCTAAATATACTAATCACTATAAATGTCAATAGACTAACTCTAGTAAAATAGAGATGCGATCTGTTGGATTAAAAAAATATAATAAATAGAACTTTTAGACAAAGATTTGTGCAGAAGGAAATTTACATCAGATTAAGGAATTTTTTCTTGTAAAAATGTGTGTCTTTGGAGCTGTTTTGCTTTGTCCTGAAGTCCTCTGTTTTTTGTGACTTGAGACACATTTCAACCATCCTCGAGGAGATTAGAATGATGAGTTACTTTTTGAATGTGCAGCAGGTAGCCCCATTTGATAGACTGCATTTTAAATACTAGGACAGTCTGCCTCTTCCATCGTGAGGGTGAGAATGCATCTGTGTCTTGTTTGGCCTCTTGCCGTGTGGCCATTTCCATGTCTCATCCCGCAG
Seq C2 exon
GATCGCTGTGTTCTCTGTGACCGTGCTGCACGACGACCGGATTGTCCTGGTGGCTGAGCAGCGGCCGGATGCCTCGGAGGAGGACAGCTTCCAGTGGATGAGCCGTGTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305:ENST00000400274:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(3.4=37.2)
A:
NA
C2:
NO
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains