DreINT0057164 @ danRer10
Intron Retention
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:603626-605328:-
Coord C1 exon
chr9:605201-605328
Coord A exon
chr9:603741-605200
Coord C2 exon
chr9:603626-603740
Length
1460 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
ATGTGTGTGTTTTCTGTCAGGAT
3' ss Score
9.39
Exon sequences
Seq C1 exon
GATAATCTGGTGTTTGTGGTGGGCAAGCTGGACGGGCTGATGGTGGTCAGTGGACGCAGGCATAATGCTGATGATGTGGTGGCCACAGCGCTGGCCGTCGAGCCCATGAAGTTTGTCTACAGAGGAAG
Seq A exon
GTATTTAACTGGAGAATATCTGATCATCTGCTGTTTAACTACGCCATGGTGTATCAGAGATACTCTAAAGTTAATCCATGATAATAATTACAAAAACAAATGGGTGACACTTTACTTGAAGGGGGACTTACTGGACACATTTATAATCATGACAGGAATATTCATGAATATTAATGAGATTTTATCCATGCTTACGTCAGTAACTAGTGTCGTCTATTAACAGTGTCAAATAATTGTATAGCTGTGTCATTAATATCAGCTGTATTGAGATTTATTCATCATTCATTTTCTTTTCGGCTTAGTCCCTTTATTAATCAGGGGTCCCCACAGCGGAATGAACCACAAACTATTCCAGCATATGTTTTACGCAGCAGATGCCCTTCCAGTACTGGGAAACACCCATACACACTCATTCACACACACACTCATACACTCCGGCCAGTGTAGTTGATCAGTTCCCCTATAGCGCATGTGTTTGGTCTGTGGGAGAAACCGGAGCACCCGGAGGAAACCCACGCCAACACGGGGAGAACATGCAAACTCCACACAGAAACACCAACTGACCCAGCTGGGACTCGAACCAGCGACCTTCTTGCTGTGAGGCCACAGTGCTAACCACTGAGTCACCGTGCTGCCCATGTATTGTAATTCATATATGTATATGAATTTGCACCGTAATAACATTCATGACACAGTTATAATGTCCTCATGACAATCATGTTTATGACAGATTTATGACAGGTTATGTTGCCATGGTAACGTCAAGATGTCATAACAAACACATCTCAAACAATGTCATCTGTGCGTTTAAAATGACAAAACTCAGCGTATGACACTTAATGACAGGTGTCTTAAGCACTGTGGAGAGGTAAGCATGATTGAACACCCAATGATGGGGGAGAGCATGCTCAGAGCTCGGCGGCTAATCAGAAATAATAAATAACACCTGTTTATTCTAGTGATTGTGCTCCTTTATTAAGGAGAACAGAAGGAGCAGCCGAGAGAGAAGGGAGAGCACACGCACACACATACACACATGTTGTGCATTTATAACCTTGCTGGTCCTACACCACCCAACCGGAGCTGGTATCGAACCGGCAACCTTCCGCATGGGAGTCGGTTGCTCTACCAAGGAGGCTAAAGACAATGGCCTCTAACATCAGTCACTAGAGCACTTTTAGAGGTCAGAGGAGTGAGGTGTACCTGCACAGTAATTATACGCATTTATAAAAATAAACCAATCGCAGACCCTGTCTTCTTCTTCCCACAACAACCGCGAACTTTAATACAAGCATGCTTACAATCTCATGAATATTCATGTCATAATTAAGTATGGAATGTGCTGCTGTTATTATGGAATCATGGTGTGGAGATGTCTCTTAGCGTTATTTATTCTCTCATCTTCATCTCCTGTGTTGAGAGGAGTGTGTTCATCTGAAGATGTGTGTGTTTTCTGTCAG
Seq C2 exon
GATCGCAGTGTTTTCTGTGTCGGTGCTGCATGATGAGCGGATAGTAGTGGTGGCGGAGCAGAGACCAGACGCTTCAGAGGAGGACAGCTTTCAGTGGATGAGCCGAGTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058:ENSDART00000115030:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(3.4=37.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAATCTGGTGTTTGTGGTGGG
R:
GCACTCGGCTCATCCACTGAA
Band lengths:
238-1698
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]