HsaALTD1030129-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000160305 | DIP2A
Description
disco interacting protein 2 homolog A [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr21:46546915-46549885:+
Coord C1 exon
chr21:46546915-46547038
Coord A exon
NA
Coord C2 exon
chr21:46549771-46549885
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGCAGGT
5' ss Score
1.9
3' ss Seq
TTCCATGTCTCATCCCGCAGGAT
3' ss Score
11.13
Exon sequences
Seq C1 exon
GACAACCTGGTCTTCATCGTGGGCAAACTGGACGGGCTGATGGTCACTGGAGTTCGCAGACACAATGCAGATGACGTTGTGGCCACCGCACTGGCCGTGGAGCCCATGAAGTTTGTCTACAGAG
Seq A exon
NA
Seq C2 exon
GATCGCTGTGTTCTCTGTGACCGTGCTGCACGACGACCGGATTGTCCTGGTGGCTGAGCAGCGGCCGGATGCCTCGGAGGAGGACAGCTTCCAGTGGATGAGCCGTGTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305-54-53,55-53-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(3.4=37.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGAGTTCGCAGACACAA
R:
CACGGTCACAGAGAACACAGC
Band lengths:
105-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains