MmuALTD0004263-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000020231 | Dip2a
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:75745258-75748398:-
Coord C1 exon
chr10:75748275-75748398
Coord A exon
NA
Coord C2 exon
chr10:75745258-75745372
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGCAGGT
5' ss Score
1.9
3' ss Seq
TTGCCTGTGTCCCCTCTCAGGAT
3' ss Score
10.61
Exon sequences
Seq C1 exon
GATAACCTGGTCTTCGTCGTGGGCAAGTTGGACGGGCTGATGGTCGTAGGAGTCCGCAGACACAATGCAGATGACATTGTGGCTACTGCCCTGGCTGTGGAGCCCATGAAGTTTGTCTACAGAG
Seq A exon
NA
Seq C2 exon
GATCGCTGTGTTCTCTGTGACTGTGCTGCACGATGACCGGATTGTCTTGGTGGCTGAGCAGCGGCCTGACGCTTCGGAGGAAGACAGCTTCCAATGGATGAGCCGTGTGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231-21-27,22-27-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(3.4=37.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGGAGCCCATGAAGTTT
R:
CTGCTCAGCCACCAAGACAAT
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: