RnoALTD0009015-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13103806-13106057:+
Coord C1 exon
chr20:13103806-13103926
Coord A exon
NA
Coord C2 exon
chr20:13105943-13106057
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGCAGGT
5' ss Score
1.9
3' ss Seq
TTGCCCGTGTCCTCTCTCAGGAT
3' ss Score
10
Exon sequences
Seq C1 exon
AACCTGGTCTTCGTCGTGGGCAAGCTGGACGGGCTGACGGTCGTAGGAGCACGCAGACATAATGCAGATGACATTGTGGCTACTGCCCTGGCTGTGGAACCCATGAAGTTTGTCTACAGAG
Seq A exon
NA
Seq C2 exon
GATCGCCGTGTTCTCTGTGACTGTTCTGCACGATGACCGGATTGTCTTGGTGGCCGAACAGCGGCCCGACTCTTCGGAGGAAGACAGCTTCCAGTGGATGAGCCGTGTGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212-28-32,29-32,30-32-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(3.4=37.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTAGGAGCACGCAGACATA
R:
AACAGTCACAGAGAACACGGC
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]