RnoALTA0012257-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000048363 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:RGD Symbol;Acc:1560828]
Coordinates
chr2:81137411-81141910:+
Coord C1 exon
chr2:81137411-81137614
Coord A exon
chr2:81141731-81141733
Coord C2 exon
chr2:81141734-81141910
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
TTCACATTTTCCTCCCACAGCAG
3' ss Score
9.3
Exon sequences
Seq C1 exon
ACCATTAAGCCCTCTGACATCGCCACAGTGCGCACACTGGGCCGACCCCCTCACCTCATCATGCGGATCATGGACTGCGTGCTGCTGCTGTTTCACAGGAGGGTCAATGCAGTGAAAATTGACCTGGACAAAAGCTGCACCGTGCCTTCCTGGCAGGAATCTTTGAAATTGATGACTGCAGGAAACTTTCTCCAGAATCTACAG
Seq A exon
CAG
Seq C2 exon
TTCCCCAAAGACACAATCAATGAAGAAGTGATAGAATTTTTGAGTCCTTACTTTGAAATGTCCGACTACAACATCGAGACCGCCAAGCGCGTCTGTGGGAATGTAGCTGGTCTTTGTTCCTGGACCAAAGCTATGGCTTCCTTTTTCTCTATAAACAAGGAGGTGCTCCCTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048363-66-66,66-65-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF060089=Laminin_I=PD(3.3=5.9),PF127772=MT=FE(24.5=100)
A:
NA
C2:
PF127772=MT=FE(21.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTGGACAAAAGCTGCAC
R:
TCATTGATTGTGTCTTTGGGGA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]