RnoALTA0012458-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007649 | Dnm2
Description
dynamin 2 [Source:RGD Symbol;Acc:2513]
Coordinates
chr8:22537365-22538421:+
Coord C1 exon
chr8:22537365-22537597
Coord A exon
chr8:22538333-22538357
Coord C2 exon
chr8:22538358-22538421
Length
25 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
3' ss Seq
CACACCATATCCTTCTCCAGATT
3' ss Score
7.49
Exon sequences
Seq C1 exon
ACAAAGGCCTTCATCCACCATGAGCTGCTAGCCTACCTGTACTCATCAGCAGACCAGAGCAGCCTCATGGAGGAGTCAGCTGAGCAGGCTCAGCGGCGGGACGATATGCTGCGCATGTACCATGCACTCAAGGAAGCGCTCAACATCATTGGGGACATCAGCACCAGCACCGTGTCCACGCCTGTGCCCCCACCTGTCGATGATACTTGGCTCCAGAACACCAGCAGCCACAG
Seq A exon
ATTACAGCCTTTCCTCCCTCTACAG
Seq C2 exon
CCCCACTCCACAGCGCAGACCTGTGTCCAGTGTGCACCCGCCGGGCCGCCCACCCGCAGTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007649-41-37,41-36-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.543 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0221213=GED=PD(56.5=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCAACATCATTGGGGACA
R:
GACACAGGTCTGCGCTGTG
Band lengths:
124-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]