MmuALTA1025299-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000033335 | Dnm2
Description
dynamin 2 [Source:MGI Symbol;Acc:MGI:109547]
Coordinates
chr9:21504430-21505715:+
Coord C1 exon
chr9:21504430-21504662
Coord A exon
chr9:21505439-21505463
Coord C2 exon
chr9:21505464-21505715
Length
25 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
3' ss Seq
TCACAATATCCTTCCTCCAGATT
3' ss Score
8.96
Exon sequences
Seq C1 exon
ACAAAGGCCTTCATCCACCATGAGCTGCTGGCTTACCTGTATTCATCAGCAGACCAGAGCAGCCTCATGGAAGAGTCAGCCGAGCAGGCTCAGCGGCGGGACGACATGCTGCGCATGTACCACGCACTGAAGGAGGCCCTCAACATTATTGGGGACATCAGCACCAGCACCGTGTCCACACCCGTGCCCCCACCGGTCGATGACACGTGGCTCCAAAACACCAGCGGCCACAG
Seq A exon
ATTACAGCCTTTCCTTCCTCCATAG
Seq C2 exon
CCCCACTCCACAGCGCCGACCTGTGTCCAGTGTGCACCCACCAGGCCGGCCACCTGCAGTGCGGGGTCCTACACCGGGGCCTCCCCTGATTCCTATGCCTGTGGGGGCCACATCCTCCTTCTCAGCACCTCCCATCCCATCCCGGCCTGGACCACAGAGTGTGTTTGCCAACAACGACCCCTTCTCTGCGCCACCTCAGATACCATCTCGGCCAGCACGGATTCCCCCTGGTATCCCTCCAGGAGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033335-66-60,66-59-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0221213=GED=PD(56.5=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGGCTCCAAAACACCAG
R:
CATAGGAATCAGGGGAGGCCC
Band lengths:
126-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types