RnoALTA0012650-5/5 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000008102 | Dph7
Description
diphthamide biosynthesis 7 [Source:RGD Symbol;Acc:1304868]
Coordinates
chr3:2176546-2177146:+
Coord C1 exon
chr3:2176546-2176611
Coord A exon
chr3:2176887-2177029
Coord C2 exon
chr3:2177030-2177146
Length
143 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCTGTCTCAAAAAAATGTAGTGG
3' ss Score
2.34
Exon sequences
Seq C1 exon
ACACTCCATGGGCGTGTGCAGCATCCAGAGCAGCCCCCATCGGGAGCACATCCTGGCTACCGGAAG
Seq A exon
TGGGGCAGCTCCTGGAAGGTATTTGGTGCTACCACAAGGAACGAGGAAAGCATGGGCTGTCCTGTGTCAGTGATCGGATGTTTCCAGCTATGATGAGCATGTTCTGCTGTGGGACACTCGGAATGTAAGACAACCGTTGGCAG
Seq C2 exon
ATGTGCCAGTGCAAGGAGGCGTGTGGCGGCTCAGGTGGCACCCGGTCCACCACCATCTACTCCTGGCGGCCTGCATGCACAACGGCTTCAAGATCCTCAACTGCCAGAAGGCCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008102-9-13,9-12,9-11,9-10,9-9-5/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=FE(55.0=100)
A:
NA
C2:
PF0040027=WD40=PD(22.5=15.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCCATGGGCGTGTGC
R:
TGGCAGTTGAGGATCTTGAAGC
Band lengths:
171-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]