RnoINT0050770 @ rn6
Intron Retention
Gene
ENSRNOG00000008102 | Dph7
Description
diphthamide biosynthesis 7 [Source:RGD Symbol;Acc:1304868]
Coordinates
chr3:2176546-2177146:+
Coord C1 exon
chr3:2176546-2176611
Coord A exon
chr3:2176612-2176973
Coord C2 exon
chr3:2176974-2177146
Length
362 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CAGTGATCGGATGTTTCCAGCTA
3' ss Score
1.31
Exon sequences
Seq C1 exon
ACACTCCATGGGCGTGTGCAGCATCCAGAGCAGCCCCCATCGGGAGCACATCCTGGCTACCGGAAG
Seq A exon
GTGAGGCCCTGGAGCAGGTTTGCTGGTCTGCATCTCTCAGCTCCTCTCCACAGAGCTCAAAACTCAGCCCATAGCTCTCCACCGACCCACAGTTCAGGTATCTGGGTCCAGAAAGTGGGGCTCAGATAAGTGGGACAGGCAGGTTGCTCAGGACTTGGACTAGCACTGGGGAGGCCGAGATGGGTGGATTCTTTAAGTTTGTGGCCAGCCTGATCTGTATAGAGTTGCAGGGCAGCCAAAGCTCTATCATGAGACCCTGTCTCAAAAAAATGTAGTGGGGCAGCTCCTGGAAGGTATTTGGTGCTACCACAAGGAACGAGGAAAGCATGGGCTGTCCTGTGTCAGTGATCGGATGTTTCCAG
Seq C2 exon
CTATGATGAGCATGTTCTGCTGTGGGACACTCGGAATGTAAGACAACCGTTGGCAGATGTGCCAGTGCAAGGAGGCGTGTGGCGGCTCAGGTGGCACCCGGTCCACCACCATCTACTCCTGGCGGCCTGCATGCACAACGGCTTCAAGATCCTCAACTGCCAGAAGGCCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008102:ENSRNOT00000046898:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=FE(55.0=100)
A:
NA
C2:
PF0040027=WD40=PD(22.5=15.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATGGGCGTGTGCAG
R:
CCTTCTGGCAGTTGAGGATCT
Band lengths:
230-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]