BtaINT0052331 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038691 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr11:105582187-105582623:+
Coord C1 exon
chr11:105582187-105582252
Coord A exon
chr11:105582253-105582450
Coord C2 exon
chr11:105582451-105582623
Length
198 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTGAGATCTGTGGGTTTCAGCTA
3' ss Score
4.25
Exon sequences
Seq C1 exon
ACACTCCATGGGCGTGTGCAGCATCCAGAGCAGCCCCCACCGTGAGAACATCTTGGCCACGGGAAG
Seq A exon
GTGAGTCCCGGCTGTGGCACCGATTCCCCCTGTGGCTGCTGTGGTGTCTGACCAGCCCGCTCTTTGAACCAGAGTGTGGGCATCGGGGGCTCAGGGAGGGACTGTGTCCTGGAGGGGTGGGGCCGGGTCTCCTTCGAGGCGTGTCCTGCCCGCGGAGCCCCGCTTCGCCGCACGCTGGTTGAGATCTGTGGGTTTCAG
Seq C2 exon
CTACGACGAGCATGTTCTCCTCTGGGACACGCGGAGCCTGCGGCAGCCACTGGCGGATGTGCCCGTGCAGGGAGGGGTGTGGAGGCTCAAGTGGCACCCGTTCCAGCGCGACCTGCTCCTGGCGGCCTGCATGCACGGCGGCTTTAAGATCATCAACTACCAGATGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038691:ENSBTAT00000063228:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=FE(61.1=100)
A:
NA
C2:
PF0040027=WD40=PD(25.0=15.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCCATGGGCGTGTGC
R:
CTGCCATCTGGTAGTTGATGA
Band lengths:
235-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development