HsaINT0182690 @ hg19
Intron Retention
Gene
ENSG00000148399 | WDR85
Description
WD repeat domain 85 [Source:HGNC Symbol;Acc:25199]
Coordinates
chr9:140458886-140459410:-
Coord C1 exon
chr9:140459345-140459410
Coord A exon
chr9:140459059-140459344
Coord C2 exon
chr9:140458886-140459058
Length
286 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTGTGGTTGGTCGGTTTCAGCTA
3' ss Score
6.97
Exon sequences
Seq C1 exon
ACACACCATGGGTGTGTGCAGCATCCAGAGCAGCCCTCATCGGGAGCACATCCTGGCCACGGGAAG
Seq A exon
GTGAGTCCCCAGGAGGCTCTCGGGCCCTTCTCGTCTCTTTCGCTGTCCCCGGGGGGCTCCTGGGCCCTTCTTCCCTCTTTCGCTGCCTTTCCTCCTGGCACCATTGCAGCATTTCGTCTGCCAGTGCTTCGCCGGAGTGTAGGTATATGGGTTTGGTAAAGGGGACTTTGTCCTCGAGGGATGCATGGGACAGGTCTCTGGGAGACGTTCTGTGCCCCCCAGGGGCCTTGTGGAACAGGTGAGCCTGGGCTTTCCTTATATGCCTCCTGTGGTTGGTCGGTTTCAG
Seq C2 exon
CTATGATGAACACATCCTACTGTGGGACACACGAAACATGAAGCAGCCGTTGGCAGATACGCCTGTGCAGGGTGGGGTATGGAGAATCAAGTGGCACCCTTTCCACCACCACCTGCTCCTGGCCGCCTGCATGCACAGTGGCTTTAAGATCCTCAACTGCCAAAAGGCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148399-WDR85:NM_138778:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=FE(55.0=100)
A:
NA
C2:
PF0040027=WD40=PD(22.5=15.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGGTGTGTGCAGCATC
R:
CCTTTTGGCAGTTGAGGATCT
Band lengths:
228-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)