GgaINT0124221 @ galGal3
Intron Retention
Gene
ENSGALG00000008750 | WDR85
Description
NA
Coordinates
chr17:1977653-1978090:+
Coord C1 exon
chr17:1977653-1977718
Coord A exon
chr17:1977719-1977917
Coord C2 exon
chr17:1977918-1978090
Length
199 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GATCTGTGATACATCTCCAGCTA
3' ss Score
4.71
Exon sequences
Seq C1 exon
ACACTCAATGGGTGTATGCAGCATTCAGTGTAGTCCCCACCGGGAGAACCTCCTGGCTACTGGCAG
Seq A exon
GTAAATCCCTTCTAGCTGCCCTTCACTAGTGTGCTTATCCTCCTCTGTTGTCTTAAATGTGTTACTGCTTCTCAAGGTGTGGTCTCTAGGAATTCATTGTGGGGAAGGTTACTTGGTATTTCCCCATTCTCTTCTGAACTTGCTGCACTTGAATCAGCTTTGCTGCTTGTCAGCATATTGATCTGTGATACATCTCCAG
Seq C2 exon
CTATGATGAGCATGTGCTGCTGTGGGACACCAGGAACATGAAGCAGCCGCTGGCAGACACCCATGTTGAAGGTGGAGTCTGGAGGTTGAAGTGGCACCCAACCTGTGATTTTGTGCTGTTAGCAGCCTGCATGCAGAGTGGATTCAAGATCCTTGACTGCCGTGGAAGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008750:ENSGALT00000014239:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=FE(55.0=100)
A:
NA
C2:
PF0040027=WD40=PD(22.5=15.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTCAATGGGTGTATGCAGC
R:
CTTCCACGGCAGTCAAGGATC
Band lengths:
234-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]