RnoALTA0016387-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000011353 | Gfi1b
Description
growth factor independent 1B transcriptional repressor [Source:RGD Symbol;Acc:1311727]
Coordinates
chr3:7192642-7194100:-
Coord C1 exon
chr3:7193963-7194100
Coord A exon
NA
Coord C2 exon
chr3:7192642-7192807
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGCCTCGTTTCCTCCGGCAGGAG
3' ss Score
7.61
Exon sequences
Seq C1 exon
GTGTTCTCCACCCCTCATGGGCTAGAAGTGCATGTCCGCCGCTCTCACAGCGGAACCCGGCCCTTTGCCTGTGACATCTGTGGCAAAACCTTTGGCCACGCTGTGAGTTTGGAGCAGCACACGCACGTGCATTCCCAG
Seq A exon
NA
Seq C2 exon
GAGCGTAGCTTCGAGTGCCGGATGTGTGGCAAAGCCTTCAAGCGCTCATCCACTCTGTCCACCCACCTGCTCATCCATTCGGACACTCGGCCCTACCCCTGCCAGTTCTGTGGGAAACGCTTCCACCAGAAGTCGGACATGAAGAAACACACCTACATCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011353-15-12,15-11-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.107
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=58.7)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=41.1),PF134651=zf-H2C2_2=PU(38.5=17.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGAGTTTGGAGCAGCACA
R:
TCATGTCCGACTTCTGGTGGA
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]