HsaALTA1042297-2/4 @ hg38
Alternative 3'ss
Gene
ENSG00000165702 | GFI1B
Description
growth factor independent 1B transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:4238]
Coordinates
chr9:132989061-132989907:+
Coord C1 exon
chr9:132989061-132989198
Coord A exon
chr9:132989742-132989749
Coord C2 exon
chr9:132989750-132989907
Length
8 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GGCCTCATTTCCTCCGGCAGGAG
3' ss Score
6.83
Exon sequences
Seq C1 exon
GTCTTCTCCACCCCTCACGGGCTCGAAGTGCATGTGCGACGCTCCCATAGTGGGACCCGGCCCTTCGCCTGTGACATCTGCGGCAAAACCTTCGGCCACGCTGTGAGCCTGGAGCAGCACACGCACGTCCACTCCCAG
Seq A exon
GAGCGCAG
Seq C2 exon
CTTCGAGTGCCGCATGTGCGGCAAGGCCTTCAAGCGCTCGTCCACGCTGTCCACCCACCTGCTCATCCACTCAGACACGCGGCCCTACCCCTGCCAGTTCTGCGGCAAGCGTTTCCACCAGAAGTCCGACATGAAGAAGCACACCTACATCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165702-27-33,27-32,27-31,27-30-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=NA C2=0.188
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=58.7)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=41.1),PF134651=zf-H2C2_2=PU(38.5=17.9)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATCTGCGGCAAAACCTT
R:
CGAGCGCTTGAAGGCCTTG
Band lengths:
107-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains