HsaALTA1042297-3/4 @ hg38
Alternative 3'ss
Gene
ENSG00000165702 | GFI1B
Description
growth factor independent 1B transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:4238]
Coordinates
chr9:132989061-132989907:+
Coord C1 exon
chr9:132989061-132989198
Coord A exon
chr9:132989676-132989749
Coord C2 exon
chr9:132989750-132989907
Length
74 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
TGGAGTGTCCTGTTCCGCAGGGG
3' ss Score
7.58
Exon sequences
Seq C1 exon
GTCTTCTCCACCCCTCACGGGCTCGAAGTGCATGTGCGACGCTCCCATAGTGGGACCCGGCCCTTCGCCTGTGACATCTGCGGCAAAACCTTCGGCCACGCTGTGAGCCTGGAGCAGCACACGCACGTCCACTCCCAG
Seq A exon
GGGATCCCGGCCGGGTCCAGTCCTGAGCCTGCACCTGACCCCCCGGGGCCTCATTTCCTCCGGCAGGAGCGCAG
Seq C2 exon
CTTCGAGTGCCGCATGTGCGGCAAGGCCTTCAAGCGCTCGTCCACGCTGTCCACCCACCTGCTCATCCACTCAGACACGCGGCCCTACCCCTGCCAGTTCTGCGGCAAGCGTTTCCACCAGAAGTCCGACATGAAGAAGCACACCTACATCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165702-27-33,27-32,27-31,27-30-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=NA C2=0.188
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=58.7)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=41.1),PF134651=zf-H2C2_2=PU(38.5=17.9)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTGCGACGCTCCCATAG
R:
TCTGAGTGGATGAGCAGGTGG
Band lengths:
183-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains