RnoALTA0018301-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000036839 | Hnrnpa1
Description
heterogeneous nuclear ribonucleoprotein A1 [Source:RGD Symbol;Acc:69234]
Coordinates
chr7:144865821-144867122:+
Coord C1 exon
chr7:144865821-144865921
Coord A exon
chr7:144866916-144866924
Coord C2 exon
chr7:144866925-144867122
Length
9 bp
Sequences
Splice sites
5' ss Seq
GGGGTTTGT
5' ss Score
1.06
3' ss Seq
GGAGTCATTTTTCCTTTTAGGAT
3' ss Score
9.17
Exon sequences
Seq C1 exon
CGCCATTTTGTCCTCATAGTCACCATGAGGCTGCGATCCGACAGCCATTAGTTTCTACGCACTGTTCCTTTTGGCAGAATTCTTACACTTAACGATCTGGG
Seq A exon
GATTCTCAG
Seq C2 exon
AGACCAGGTGCCCACTTAACTGTGAAGAAGATCTTTGTTGGCGGTATTAAAGAAGACACTGAAGAACATCACCTACGAGATTATTTTGAGCAGTATGGGAAAATTGAAGTGATTGAAATTATGACTGACAGAGGCAGTGGAAAAAAGAGGGGATTTGCGTTTGTCACCTTTGATGACCATGACTCTGTGGATAAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036839-1-4,1-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.070
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0007617=RRM_1=PU(81.4=80.3),PF072928=NID=PU(32.6=21.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATCCGACAGCCATTAGTT
R:
TCTTCACAGTTAAGTGGGCAC
Band lengths:
97-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]