GgaALTA1015806-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009250 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
Coordinates
chr7:15333546-15333819:-
Coord C1 exon
chr7:15333673-15333819
Coord A exon
chr7:15333583-15333594
Coord C2 exon
chr7:15333546-15333582
Length
12 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TGTAATTGTTGGTGTTGCAGGAT
3' ss Score
7.61
Exon sequences
Seq C1 exon
GTTATGAGAGACCCACAAACAAAACGTTCCAGAGGCTTTGGCTTTGTTACTTACTCTTGCGTGGAAGAGGTGGATGCGGCCATGAGCGCTCGACCACATAAGGTGGATGGACGTGTGGTTGAACCAAAGAGAGCAGTTTCAAGGGAG
Seq A exon
GATTCTGTAAAG
Seq C2 exon
CCTGGGGCGCATCTCACAGTAAAGAAAATATTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009250-16-10,16-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.367 A=NA C2=0.113
Domain overlap (PFAM):
C1:
PF142591=RRM_6=PD(57.1=81.6)
A:
NA
C2:
PF0007617=RRM_1=PU(81.4=80.3),PF072928=NID=PU(34.1=21.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAGCGCTCGACCACATAA
R:
TCTTTACTGTGAGATGCGCCC
Band lengths:
92-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]