DreALTA0013863-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000059351 | hnrnpa3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:ZFIN;Acc:ZDB-GENE-060224-1]
Coordinates
chr9:1696183-1697980:-
Coord C1 exon
chr9:1697834-1697980
Coord A exon
chr9:1696363-1696393
Coord C2 exon
chr9:1696183-1696362
Length
31 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACC
5' ss Score
5.57
3' ss Seq
ATTGAACATTCATTATCCAGGAC
3' ss Score
5.29
Exon sequences
Seq C1 exon
GTCATGAGAGATCCTGCCAACAAGCGTTCTCGAGGTTTTGGCTTTGTGACGTACTCCAGTGTCTCAGAGGTGGACGCTGCCATGACAGCTCGGCCACACAAAGTGGACGGTCGCGTGGTTGAGCCCAAACGGGCCGTTTCCAGAGAG
Seq A exon
GACTCTAATAAACCCGGAGCTCATCTGACAG
Seq C2 exon
TGAAGAAGATCTTTGTCGGCGGGATTAAGGAGGACACAGAGGAGTATCACATCAGGGAGTACTTTGAGTGCTACGGCAAGATTGAGACCATCGATATCATGGAGGAGCGCTCGACTGGGAAGAAGAGAGGATTCTGCTTCGTCACCTTCGACGATCACGACACCGTCGACAAAATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059351-2-3,2-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=NA C2=0.076
Domain overlap (PFAM):
C1:
PF142591=RRM_6=PD(57.1=81.6)
A:
NA
C2:
PF0007617=RRM_1=PU(81.4=80.3),PF059186=API5=PU(40.9=63.4),PF072928=NID=PU(33.3=21.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCAGTGTCTCAGAGGTGG
R:
CCCGCCGACAAAGATCTTCTT
Band lengths:
118-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]