MmuALTA1039043-4/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000059005 | Hnrnpa3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:MGI Symbol;Acc:MGI:1917171]
Coordinates
chr2:75659267-75662033:+
Coord C1 exon
chr2:75659267-75659323
Coord A exon
chr2:75661896-75661958
Coord C2 exon
chr2:75661959-75662033
Length
63 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
TATAATTATTTTATTTGTAGGAT
3' ss Score
8.5
Exon sequences
Seq C1 exon
CTCTCGGTCCCATATTGAACTCGAGTTGGAAGAGGCGAGTCCGGTCTCAAAATGGAG
Seq A exon
GATTCTGTAAAGCCTGGTGCCCATTTAACGGTGAAGAAAATTTTTGTTGGTGGTATTAAAGAG
Seq C2 exon
GATACGGAAGAATATAACCTGAGAGACTACTTTGAAAAGTATGGCAAGATTGAAACCATAGAGGTTATGGAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059005-0-5,0-4,0-3,0-2-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.096
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0007617=RRM_1=PU(81.4=80.3),PF072928=NID=PU(34.9=21.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCGGTCCCATATTGAACTCGA
R:
CCTCTATGGTTTCAATCTTGCCA
Band lengths:
120-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types