RnoALTA0018507-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000002826 | Hsd17b7
Description
hydroxysteroid (17-beta) dehydrogenase 7 [Source:RGD Symbol;Acc:2837]
Coordinates
chr13:88290765-88291979:-
Coord C1 exon
chr13:88291838-88291979
Coord A exon
chr13:88290866-88290871
Coord C2 exon
chr13:88290765-88290865
Length
6 bp
Sequences
Splice sites
5' ss Seq
CTGGTGCGC
5' ss Score
6.68
3' ss Seq
CAAGAGGTTTTTTTGTAAAGATA
3' ss Score
-0.53
Exon sequences
Seq C1 exon
ATGGACGTAGATGAAGACACTGCAGAAAAGTTCTACAAGACCTTACTGGAGCTAGAAAAGCAAGTCAGGATCACCATTCAGAAATCAGATCACCACAGCTGACAGCGACGTTCCCCAGAGCATCCAGTCCGCGTACGCCCTG
Seq A exon
ATACAG
Seq C2 exon
GTGAGGATGAGCCCACGCCCTCGGACTCCTCTTCTCTCTCTGGGACACAAGAGATGGTTCATCCTGAGATTCTTCATCCTGAGTGAGCTCCCATTTGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002826-14-15,14-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATCACCACAGCTGACAGC
R:
GAGAGAAGAGGAGTCCGAGGG
Band lengths:
95-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]