RnoINT0071976 @ rn6
Intron Retention
Gene
ENSRNOG00000002826 | Hsd17b7
Description
hydroxysteroid (17-beta) dehydrogenase 7 [Source:RGD Symbol;Acc:2837]
Coordinates
chr13:88288046-88291979:-
Coord C1 exon
chr13:88291838-88291979
Coord A exon
chr13:88290872-88291837
Coord C2 exon
chr13:88288046-88290871
Length
966 bp
Sequences
Splice sites
5' ss Seq
CTGGTGCGC
5' ss Score
6.68
3' ss Seq
CAAGAGGTTTTTTTGTAAAGATA
3' ss Score
-0.53
Exon sequences
Seq C1 exon
ATGGACGTAGATGAAGACACTGCAGAAAAGTTCTACAAGACCTTACTGGAGCTAGAAAAGCAAGTCAGGATCACCATTCAGAAATCAGATCACCACAGCTGACAGCGACGTTCCCCAGAGCATCCAGTCCGCGTACGCCCTG
Seq A exon
GTGCGCGCAGCTTTCTATCATACTGGGTGATACATGTTTGTAGTAAACCATAAGCCATGATGATCTCTCCTCCTACTTTTTAGAATGGTCTCCAAGACTGCGTGGGTGCACTTGTGAGAAAGGCGTCGCAAAGCAGAGGGGCCAGCTGAATACCCTCCAGAGTAGTGTCCTGTCAGAATTGCTAGAGGCTTCCCGCAGAGCATCCTCGGATAGCATTCTGCCACCCGGAGCCCAGTAGTTTAGACTTGCGTGATGGGGACACAGTACAGCCTGAATCTTCTTTTAGTCCCAGCGAGGAGAGGCAATGCTACTGACTAGGACTTCTACTTCCTTTGCTTTTCTCCATGATCCCTTTTTTTTTTTTTTAACTCTCTTTACATTCTTCATATGCTGCTTCGGATAATCTCATACGTTGTCTGAGCACGTGGCCCCACGTGACCGCCCACGCAGTCATTTTCAGGAACAAAGTATGTTTGTGTTTGGGCCACAAGCATGGTTTCTGATCTTTAATAACATCCACAGATGTATTCATTATGAACAGCTTATCGTCACGATCATAGTTCACTGGAATTAAACTTGTAGCAAACATCTATTTCTTTGTGTTTCAATAAAATTAAAAAAAAAAAAACTTGAGAAACTGCTAGGAAGCCATCCAGTGCACAGTGGACACAGAAGAAAAGCGTTCGTTTTTATGTGTAAGATGATGGAGTTTTTCAAACCTTTTCTCCATAAATCTTAAAGAACCACACCTGAGCATCCTTTGTTATGAACCAAAATGCTAGAGATGGCCAGGCATTTATATCATAAAGGCATCCTGTCACTCGGGATACAATCAAGTCAGTAAAAGTCTGAATGGAAGTGAGAAAAAAGTGATACGTAAATATAATCTCCCTACGGCTTGTGGGTATGAAAACCTTCTGGTTAGAGTTTCTTTAATTTTGTTGACCAAGAGGTTTTTTTGTAAAG
Seq C2 exon
ATACAGGTGAGGATGAGCCCACGCCCTCGGACTCCTCTTCTCTCTCTGGGACACAAGAGATGGTTCATCCTGAGATTCTTCATCCTGAGTGAGCTCCCATTTGGAAAAGGCTCCAGGGGAACTCATGTGTCTCATCTGCAAAGCAAAGCAGTCCCCTCTTTGCTCCGTTCCTCACGGGCAGCGTGCTTGAGGACCTGTCCTCCTCGCGGGCAGCATGCTTGAGGACTGGATCCTTGCTGAGTGAACCGTGAGAATTCCTCATTTTGGTTGAGAATGGTGAGGTTTCTTAGAGATCAGGAAGCCAGTGTGCCAAGGTCTAGGCATCGCCCACTGCCCGTCTGACGGAGGGTCTGCTCTGTCCCCCGCGTGTTTCTAGGAGACAGCACAGAGCTCTGCAGGATGGTGTGGGGAGCTCTAGGGGCCCTGTGGCTGGGTAGTCAGAGTGGATTTAGAGAAAGCTTGGGTTTTGCTCATTTGTGAGTTTGGGGAAAACATCCTTTGCTGGGGTTGTCAACTTATAAACATCAAGTTATTCATAGAGTATCTTTATTCTTTTGCTGGCTACATTAGTGATTCCCTCCCTTTTAGTCCTGATCCTGCTGTCTTCCCACTGTCAGTAGGGCAGGAGTTTCCCATGTTGGTGATGTTTGCAGAGAACCATGTTTCTGCCTCATTTTTTTTTCTTGTCCTTCCTCATTACTTACACATTATCCATACAGAGTTTTAGCTCTGCTTATTTTAAGTATCTTCCTTTTGTTTTCTTTGGTTTAAAGTAAGCCTTTTCTAGTTCCTTGAGTGAAAACTTAGGCTCCTTATTTGGAAATTTTTCTTGATTGCCACTGGAAGCATTTAACTATAAGCATTTAATTACATACATACCATTCTTAGCCTGACTTAACTGCACCCCACATTTGCTGACATGCTGTCCTGCTCTCTCTTTCTTTCAACCACAGATTATTTTATTAATTTCTGTTGGGGTTTCCTTTTATGAGTTATTAAGCGATGTTTAATGTTCATATCTTTAGAGATAGAAAAGATTGATATTTGGCTGGGAAGATGGCTTAGTGGTTGAGATCACTGGCTACTCTTTCAGAGGATCCAGGTTGTAATCCTAGCGCCTTGTTCTGGTGGCTCACAAGATCTCTAACTCCAGTTCTAGGGGATGTGATGCCCTCTTCTGGCCTCTCTGGGTACCACAGGTGCTTGAATGATTAGTCTGTGGGTTTTTCTCCACACCATGCCAGCTCGTATTTCCTCCTTGGAACGCTCTGGATTGTTCTCTGCATTTGTGCAGAGTTCACAGTTGCTCTGCAGGCAAGCCTTGTCTGGAAGGGCCACACTGCTCTGTTTACCTTTGCACCTTTACGCCATCTCCGTTTCTACTCCGTTTTTACTCTTCCGACACTTTCCTGTGTTCAGTCAGCTTTTAATTATTCTGTGGCCATTTCTGGTTTTAGTTTTGAAATGTTGATTCCTTTTATTCTTAATTTATTTTGATGTATTTATTTTGCATGCTCAGGCATGTCGAATTCAGGGCCTTGGAGCTGTCTTCCTTCTCCCTGTAGTTGATTCTCTAGGGAGGAACACTGTATCTTACCTGTCAACTAAAGCTTTTGTTTGGCTGGTTCGTTTTTCGAATTTTGTTTTCTTCAGTCCTCAATAAGGTCTTTGATAGTTACTGAATCTAAAAATTCATCATGTCCCTCGGGTTTTATGATCCTTATCTACCTTGTAAAAACAAAACAAAATACTTATTTGAGGGCTGAAGAGATGGCTCAGCCTTTAAGAGCGCTGTCTGTTCCTCCAGAGGACCCAGCTCTCTTACAGTCATCTGTACCTCTTGTTCCAGGGGACCCAGTGTTCTTGTCTCATGGTCACTGGGCACACAAGTGGTGCATAGACATATGTTCAGGAAAAACACCCATACACACAAAAGTAAAAGTTGAGTCTTAAACCCATAATAAAACCCATTAATGGGGTTGGGGGTAAAGTTGCGATGAAGCTAAAATCTGTGCGTATCACCAGATCTTGCCTCCTTGCCCTGAATGCTTCCTGATAAACATTAGACGCGGGCTACTGCCCCACCCCCACCCCGTTCCTTTTCTTGCCCTGTTCCAAGCTAACCTGGAGTGTACCCCTCCATCCCTCCTGCAGGATCCTAGCCACATCTGAAGCCATGAACATAATTCTCATTCTTACAGACACATACCAGCCTTGAACAACTTATTTTCCTTGTATCGATAGAGGGTGCTTAAAAAAAATTACCTATTTTTGTGTCAAACTGTGTGTTCACGTCTTTCACCATTTCTTATTTGATTTTCCACCTTTGATAATGGGCGAATCTATATAATAGAGAATGAAGCTCTTGCCTGAAATATCATTTACTTATCTGACATTCGTGCTTACCTCACTTGTTTATTGTCCTTTAATATTCCAAAGGATCAGCACCAAGACCTTTTACTATTGTTCCTCCTTGTGTTTCTAATCTTTGATCAATGATTGCCACTTCCTTGATGAATATATGAACAGTTGATTGAGCAAGCATTTATTTGAATAAAAGTATCATGCTACTTGGTCTAGGCTCAGTTGTCTTAGACCCGGCTGATTTTTCTTATGCCACATTTCAAAAAGCTACACTGTATCTTTCTTTGGAATAACGTTCAGAATACCAAGCTGGAGTTTACCGAGACTCTGTCATTATTTTCCAATCTTAGAACGTTATGTCATCCTAATAAATATACTTCCTTCTCATGTCATTGTTGTCTGTATTTTGTAAGTTAACGCTTGGACAAATTGACACCTATCACTCACAAGTTAAAAGCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002826:ENSRNOT00000003812:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCCAGAGCATCCAGTCC
R:
GCACACTGGCTTCCTGATCTC
Band lengths:
342-1308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]