RnoALTA0018604-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000034066 | Hspa8
Description
heat shock protein family A (Hsp70) member 8 [Source:RGD Symbol;Acc:621725]
Coordinates
chr8:44990014-44990961:+
Coord C1 exon
chr8:44990014-44990218
Coord A exon
chr8:44990804-44990870
Coord C2 exon
chr8:44990871-44990961
Length
67 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TAATTCATTGTGTTTTCTAGACT
3' ss Score
7.08
Exon sequences
Seq C1 exon
ATGTCTAAGGGACCTGCAGTTGGCATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGAAAGGTGGAAATAATTGCCAATGACCAGGGTAACCGCACCACGCCGAGCTATGTTGCTTTCACCGACACAGAACGATTAATTGGGGATGCGGCCAAGAATCAGGTTGCAATGAACCCCACCAACACAGTTTTTG
Seq A exon
ACTGTTACCAATGCCGTGGTCACCGTGCCAGCTTACTTCAATGACTCTCAGCGACAGGCAACAAAAG
Seq C2 exon
ATGCTGGAACTATTGCTGGCCTCAACGTACTTCGAATTATCAATGAGCCAACTGCTGCTGCTATTGCCTATGGCTTAGATAAGAAGGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034066-5-4,5-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=PU(10.4=91.3)
A:
NA
C2:
PF0001215=HSP70=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGGTGTCTTCCAGCATG
R:
GGCCAGCAATAGTTCCAGCAT
Band lengths:
177-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]