RnoALTA0020293-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000013312 | Kcnt2
Description
potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol;Acc:735074]
Coordinates
chr13:57380035-57403624:+
Coord C1 exon
chr13:57380035-57380143
Coord A exon
NA
Coord C2 exon
chr13:57403475-57403624
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
TGTGTGTGCTTGTGTTGCAGAGA
3' ss Score
10.25
Exon sequences
Seq C1 exon
ATCATGTTGTTTGTGAAGAAGAGTTTAAGTACGCCATGTTAGCTTTAAACTGTATATGCCCAGCAACATCTACACTTATTACACTACTGGTTCATACCTCTAGAGGGCA
Seq A exon
NA
Seq C2 exon
AGAAGGGCAGCAGTCACCTGAACAGTGGCAGAAGACGTATGGGAGGTGCTCAGGAAATGAAGTCTACCACATCGTTCTGGAAGAAAGTACATTTTTTGCTGAATATGAAGGGAAGAGTTTTACCTATGCTTCTTTCCATGCACACAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013312-22-26,22-25-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(31.9=100)
A:
NA
C2:
PF0349313=BK_channel_a=FE(47.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCAGCAACATCTACACTT
R:
TGAGCACCTCCCATACGTCTT
Band lengths:
105-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]