RnoALTA0020371-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000025702 | Kdm2b
Description
lysine demethylase 2B [Source:RGD Symbol;Acc:1310217]
Coordinates
chr12:39149424-39149948:+
Coord C1 exon
chr12:39149424-39149510
Coord A exon
chr12:39149688-39149693
Coord C2 exon
chr12:39149694-39149948
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
CTCTCTTTTTGGCCTACAAGCAA
3' ss Score
3.03
Exon sequences
Seq C1 exon
ATTAAGGAATCAGAGGGTGTGGTCAACGATGAGCTTCCCAACTGCTGGGAGTGTCCGAAGTGTAACCATGCCGGCAAGACCGGGAAA
Seq A exon
CAAAAG
Seq C2 exon
CGTGGCCCTGGCTTTAAGTATGCCTCCAACTTGCCTGGCTCCTTGCTCAAGGAGCAGAAGATGAACCGGGACAACAAGGAAGGGCAGGAGCCTGCCAAGCGGAGGAGTGAGTGTGAAGAGGCCCCCCGTCGCAGGTCAGACGAGCACCCCAAGAAGGTGCCTACAGATGGCATCCTCCGCCGAAAGTCTGACGATGTGCACCTGAGGAGGAAGCGGAAATACGAGAAGCCCCAAGAGCTGAGTGCACGCAAGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025702-29-20,29-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.989
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(35.4=79.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGGTGTGGTCAACGATG
R:
GCATACTTAAAGCCAGGGCCA
Band lengths:
100-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]