RnoALTA0020884-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000060246 | Klrd1
Description
killer cell lectin like receptor D1 [Source:RGD Symbol;Acc:2978]
Coordinates
chr4:163363978-163365760:+
Coord C1 exon
chr4:163363978-163364040
Coord A exon
chr4:163365678-163365680
Coord C2 exon
chr4:163365681-163365760
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TTGTTACTTTATTTCCAAAGAAG
3' ss Score
4.06
Exon sequences
Seq C1 exon
CATTTACTATACAGAACATTCAATCGACACCTTCTTCAACCCCGATAGTAGAATTCCAGAAAG
Seq A exon
AAG
Seq C2 exon
AAAAGTCCTGGAAAGGAAGCAGAGAGTTTTGTGCTTCTCAGAATTCCAGTCTTCTTCAGCTCCAAACCAGAAATGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060246-6-9,6-8,6-7-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005916=Lectin_C=PU(27.3=52.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACCTTCTTCAACCCCGAT
R:
TGGTTTGGAGCTGAAGAAGACTG
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]