RnoINT0080277 @ rn6
Intron Retention
Gene
ENSRNOG00000060246 | Klrd1
Description
killer cell lectin like receptor D1 [Source:RGD Symbol;Acc:2978]
Coordinates
chr4:163363978-163365760:+
Coord C1 exon
chr4:163363978-163364040
Coord A exon
chr4:163364041-163365608
Coord C2 exon
chr4:163365609-163365760
Length
1568 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TGATGTGTTTTTTCTATTAGTTT
3' ss Score
7.77
Exon sequences
Seq C1 exon
CATTTACTATACAGAACATTCAATCGACACCTTCTTCAACCCCGATAGTAGAATTCCAGAAAG
Seq A exon
GTAGGTTTTATTTCTTTTTTTTTTCATGTACAGCAGCATGGTTTCACTGAGTAAAATGGTCTCATTTTATTGATCTGTAGTAAAAAATAAATAAAATTATATCGAGTCATGCATGTAAGCCAGTTTAAGAGATACTTTATGTGAACACGACATAGAGCAGAGGCTCACTTTTTCCTCAGAATTTTAGAAGTTTTGGTAGGTGGTCATCTGGGCCTGTCATTCTTGCACCTAAACTGAAACATTGTGTCATGGTGGAAGCTTGTGTGGGTACAGAGCCACTCATGTCCTAGTAGCTAGAAACCAAAAGAGAGGAAGGAGAAAATGAAGAGGAGAGTTTCCATTCTTTATGGAAGAGCCTCCCTGAGTACTCTGAAAAGAACCACTGTATTCTTCATTTAAAAGGTGGCTTGGCTGCCTCATCACAAGTTGGATGTGAATGGGTCCAAAGTCAAGTCATAATTTTCACGAAAAGGGAAGATATTAGTCTGAAGTAGTACGTACACGTTTCTTTCTTAATGAGTGTTCATGGACAGCTAAGTGACAATGTACATTACAGACAAATATTATTTTGTATTTGCTAACAACCTATGCTTTCATACTCTTTCCTTTCTTCTGCTTCTATAATTCAGAATACAGTGTAGACATCTGTAATAATAGACCTTACTCATAAAGGATAGGGTCAAACTATTTTAATATTCTTTTTCAAATGCTCCTTAAGCTTATAGCCTTCTGATCACACAGTTAATTTTTATCTTATGCCAACTTTAGTGCCATTTATGTGATAAAGATTTGAGTGCCTACTATGTGTCATGATGTTTATTACCAAGGAAGAGAGGTGCTGAGGATACACTGTCACCCCTAACCTGTCAATCAGACTATTGGCTTATGTATTGGCTTACACATACTCATTTTTTTTTTTTTTTTTTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCACACATACTCATTTTTATTTTATTTATGTTATTTTTTTAAATTTTTTTATCTTTATTAACTTGAGTATTTCTTATTTACATTTCGATTGTTATTCCCCTTCCCAGATTCTGGGCCAACATCCCCCTAACCCCTCCCCCTCTCCAAAGAAAATATCTGAACACATAAAAATTCTTTTAAAGTACTGTGTACCTTTGTTTGACTCAAGGAATTGGAAGAGTGCCATCCCTGTGAGTCTTTTTCTTCTAGTTACTCTTACATTCACAGCCATTCTCTGCTGTGGGTTCATTCTCAAAGCTGTTCTTCTGACTCCAGTCCTGTCCTGTTCTCTGCTATAGGACGAATTTCTTTTCTTTTCTCATCTAGTTATAACACAACATAATGAAGGATTGAGAATGTTGTCATTTTGAATCTATCTTTAGGATACCCTTTCCACGAGAGGCATAGTGTTTGGATGAATAGTGCTGTAATGTGACATGTATAACACGCTCTGAAGGATTGGCTGCAGAAAAAAAGAAATGAATAGTGAACAGATAATCTTTGATGATGTGTTTTTTCTATTAG
Seq C2 exon
TTTCTAAATGCTGTGCTTGCCTGGAAAAGTGGATTGGGCATCAATGCAGTTGTTACTTTATTTCCAAAGAAGAAAAGTCCTGGAAAGGAAGCAGAGAGTTTTGTGCTTCTCAGAATTCCAGTCTTCTTCAGCTCCAAACCAGAAATGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060246:ENSRNOT00000082064:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005916=Lectin_C=PU(27.3=52.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGAACATTCAATCGACACCT
R:
CAATTCATTTCTGGTTTGGAGCTGA
Band lengths:
206-1774
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]