RnoALTA0020891-3/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000061739 | Klrk1
Description
killer cell lectin like receptor K1 [Source:RGD Symbol;Acc:3180]
Coordinates
chr4:163400938-163402561:-
Coord C1 exon
chr4:163402325-163402561
Coord A exon
chr4:163401046-163401157
Coord C2 exon
chr4:163400938-163401045
Length
112 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
AAACGTGTGCTTCCTCTTAGAAA
3' ss Score
6.91
Exon sequences
Seq C1 exon
TGTCACCTATCTTTAATCTCATCACTCAGGAAGCAGAGACAGGCTATCTCTGCAAATCTGAGGACAGCTTGGTCTATACAGGAAGTTCTAAGATATCCAGGGCTTCAGAGAGACAAACTGTCTTTAGAAAGGTTAATTCATAAATGATGAAAACTAGACTCTGGTGCAGTTTCTAAAGTAAATCTCATAATTATCACATGATGGCATGGGTTCGTGATCGAAAGTCTCATCACCCAG
Seq A exon
AAAAATGCTCATAGGAAGTATATCCATGGAAAGACAAGGTCAAGGGCGGAAACATATTCTTCAAATGGCAGGCAGTCCATGGACTTGTGTCAACTTGAATTGCTTCCTCCAG
Seq C2 exon
AGATGAGCAAATGCCATAATTATGACCTCAAGCCAGCAAAGTGGGATACTTCTCAAGAGCATCAGAAACAAAGATCTGCACTCCCTACCAGCCGACCTGGAGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061739-1-6,1-5,1-4,1-3-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.404
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGAAGCAGAGACAGGCT
R:
CACTTTGCTGGCTTGAGGTCA
Band lengths:
256-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]