RnoEX0047546 @ rn6
Exon Skipping
Gene
ENSRNOG00000061739 | Klrk1
Description
killer cell lectin like receptor K1 [Source:RGD Symbol;Acc:3180]
Coordinates
chr4:163400938-163403653:-
Coord C1 exon
chr4:163403604-163403653
Coord A exon
chr4:163402325-163402604
Coord C2 exon
chr4:163400938-163401045
Length
280 bp
Sequences
Splice sites
3' ss Seq
ATTTGACTTATCTCTTTAAGAGT
3' ss Score
6.02
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GAGTAGAAGGCTTTGATTCACAAGAAACAGGACCTCCCTTCTCTGCTCAG
Seq A exon
AGTCCTGTGTGCATTACAGAAATTGAGCCTGAACCAGAAGCAGTGTCACCTATCTTTAATCTCATCACTCAGGAAGCAGAGACAGGCTATCTCTGCAAATCTGAGGACAGCTTGGTCTATACAGGAAGTTCTAAGATATCCAGGGCTTCAGAGAGACAAACTGTCTTTAGAAAGGTTAATTCATAAATGATGAAAACTAGACTCTGGTGCAGTTTCTAAAGTAAATCTCATAATTATCACATGATGGCATGGGTTCGTGATCGAAAGTCTCATCACCCAG
Seq C2 exon
AGATGAGCAAATGCCATAATTATGACCTCAAGCCAGCAAAGTGGGATACTTCTCAAGAGCATCAGAAACAAAGATCTGCACTCCCTACCAGCCGACCTGGAGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061739_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.415
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAGAAGGCTTTGATTCACAAGA
R:
ATTCTCTCCAGGTCGGCTGG
Band lengths:
156-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]