HsaEX6065165 @ hg19
Exon Skipping
Gene
ENSG00000213809 | KLRK1
Description
killer cell lectin-like receptor subfamily K, member 1 [Source:HGNC Symbol;Acc:18788]
Coordinates
chr12:10539502-10542640:-
Coord C1 exon
chr12:10542542-10542640
Coord A exon
chr12:10541370-10541474
Coord C2 exon
chr12:10539502-10539609
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCCAGTTTTATTTTATTCAGGAA
3' ss Score
6.55
5' ss Seq
GGGGTATGT
5' ss Score
7.48
Exon sequences
Seq C1 exon
ACTTTCAATTCTAGATCAGGAACTGAGGACATATCTAAATTTTCTAGTTTTATAGAAGGCTTTTATCCACAAGAATCAAGATCTTCCCTCTCTGAGCAG
Seq A exon
GAATCCTTTGTGCATTGAAGACTTTAGATTCCTCTCTGCGGTAGACGTGCACTTATAAGTATTTGATGGGGTGGATTCGTGGTCGGAGGTCTCGACACAGCTGGG
Seq C2 exon
AGATGAGTGAATTTCATAATTATAACTTGGATCTGAAGAAGAGTGATTTTTCAACACGATGGCAAAAGCAAAGATGTCCAGTAGTCAAAAGCAAATGTAGAGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213809-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGCTTTTATCCACAAGAATCA
R:
CATTTTCTCTACATTTGCTTTTGACT
Band lengths:
154-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)