HsaEX6065165 @ hg38
Exon Skipping
Gene
ENSG00000213809 | KLRK1
Description
killer cell lectin like receptor K1 [Source:HGNC Symbol;Acc:HGNC:18788]
Coordinates
chr12:10386903-10390018:-
Coord C1 exon
chr12:10389943-10390018
Coord A exon
chr12:10388771-10388875
Coord C2 exon
chr12:10386903-10387010
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCCAGTTTTATTTTATTCAGGAA
3' ss Score
6.55
5' ss Seq
GGGGTATGT
5' ss Score
7.48
Exon sequences
Seq C1 exon
TGAGGACATATCTAAATTTTCTAGTTTTATAGAAGGCTTTTATCCACAAGAATCAAGATCTTCCCTCTCTGAGCAG
Seq A exon
GAATCCTTTGTGCATTGAAGACTTTAGATTCCTCTCTGCGGTAGACGTGCACTTATAAGTATTTGATGGGGTGGATTCGTGGTCGGAGGTCTCGACACAGCTGGG
Seq C2 exon
AGATGAGTGAATTTCATAATTATAACTTGGATCTGAAGAAGAGTGATTTTTCAACACGATGGCAAAAGCAAAGATGTCCAGTAGTCAAAAGCAAATGTAGAGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213809-'2-5,'2-4,3-5=AN
Average complexity
A_NA
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGCTTTTATCCACAAGAATCA
R:
CATTTTCTCTACATTTGCTTTTGACT
Band lengths:
154-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains