MmuEX0025833 @ mm9
Exon Skipping
Gene
ENSMUSG00000030149 | Klrk1
Description
killer cell lectin-like receptor subfamily K, member 1 [Source:MGI Symbol;Acc:MGI:1196250]
Coordinates
chr6:129571153-129573882:-
Coord C1 exon
chr6:129573829-129573882
Coord A exon
chr6:129572555-129572787
Coord C2 exon
chr6:129571153-129571260
Length
233 bp
Sequences
Splice sites
3' ss Seq
GAGTCTTTTGTGTATTACAGAAA
3' ss Score
7.59
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGTTGAGTTGAAGGCTTTGACTCACAAGAAACAGGATCTCCCTTCTCTGCTCAG
Seq A exon
AAATTAGGACAGATTCGGAAGTGGTGTCACATATCTTTAATCTCAGCATTCAGGAAGCAGAGGCAGATTATCTCTGTAAATCTGAGGTAGCCATGGCTGCAGAGAGATACACTGTCTTAAAAAATGTTAGTTAATAAATAACAAAAACTACAACCTGGATCAGTTTCTGAAGTAAATCTCTCATAATTCTCACATAATGGCATTGATTCGTGATCGAAAGTCTCATCACTCAG
Seq C2 exon
AGATGAGCAAATGCCATAATTACGACCTCAAGCCAGCAAAGTGGGATACTTCTCAAGAACAACAGAAACAAAGATTAGCACTAACTACCAGTCAACCTGGAGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030149_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.159
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTGAAGGCTTTGACTCACA
R:
CAGGTTGACTGGTAGTTAGTGCT
Band lengths:
150-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: