RnoALTA0022422-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000016204 | Lrrc24
Description
leucine rich repeat containing 24 [Source:RGD Symbol;Acc:1308720]
Coordinates
chr7:117780653-117782734:-
Coord C1 exon
chr7:117782566-117782734
Coord A exon
NA
Coord C2 exon
chr7:117780653-117780753
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CTCTATTCTGCCCCACACAGAGA
3' ss Score
6.26
Exon sequences
Seq C1 exon
CGACTACAGGAACTTCATCTTCAAGAAAACAGCATTGAATTACTGGAAGACCAGGCCCTGGCTGGGCTTTCCTCCCTGGCCCTACTGGACCTCAGCAGGAACCAACTGGGCACCATCAGCAAGGAGGCCCTGCAGCCTCTGAGCAGCCTACAAGTGCTACGCCTCACAG
Seq A exon
NA
Seq C2 exon
AGAACCCATGGCGTTGTGATTGTGCCCTTCACTGGTTGGGCTCTTGGATCAAAGAGGGGGGCCGACGGCTGCTGAGCTCCAGAGACAAGAAGATCACATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016204-7-12,7-11-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.312
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(93.3=100)
A:
NA
C2:
PF138551=LRR_8=PD(3.3=0.6),PF0767911=I-set=WD(100=33.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGAGCAGCCTACAAGTGC
R:
TCTTGTCTCTGGAGCTCAGCA
Band lengths:
123-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]