RnoEX6032937 @ rn6
Exon Skipping
Gene
ENSRNOG00000016204 | Lrrc24
Description
leucine rich repeat containing 24 [Source:RGD Symbol;Acc:1308720]
Coordinates
chr7:117779620-117783152:-
Coord C1 exon
chr7:117782874-117783152
Coord A exon
chr7:117782566-117782734
Coord C2 exon
chr7:117779620-117780753
Length
169 bp
Sequences
Splice sites
3' ss Seq
ATCTCCTGCCCCTACTTCAGCGA
3' ss Score
6.45
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
ACGCTGTTCCTGCAAGACAACAGCATCGCGCACCTGGAGCAAGGCGCCCTGGCACCGCTTGCTGCCCTGCGACACCTCTACCTGCATAACAATACCCTGCGGGCGCTGGAGTCTGGCGCCTTTCGTGCACAGCCCCGCCTGCTTGAACTGGCGCTGACCGGCAACCGGCTTCGGGGATTGCGTGGCGGCGCCTTTGTGGGCCTGGTCCAGCTTCGAGTGCTTTACCTGGCTGGAAACCAGCTGGCGAAGCTGCTAGATTTCACCTTTTTGCACCTGCCG
Seq A exon
CGACTACAGGAACTTCATCTTCAAGAAAACAGCATTGAATTACTGGAAGACCAGGCCCTGGCTGGGCTTTCCTCCCTGGCCCTACTGGACCTCAGCAGGAACCAACTGGGCACCATCAGCAAGGAGGCCCTGCAGCCTCTGAGCAGCCTACAAGTGCTACGCCTCACAG
Seq C2 exon
AGAACCCATGGCGTTGTGATTGTGCCCTTCACTGGTTGGGCTCTTGGATCAAAGAGGGGGGCCGACGGCTGCTGAGCTCCAGAGACAAGAAGATCACATGCGCAGAACCTCCACGCCTGGCGCTACAAAGTCTGCTGGAAGTATCTGGGGGTAGCCTTATCTGCATTCCTCCCTCCGTGAACGCGGAGCCCCCGGAACTCACAGCTAATCTGGGAGAGGACCTGCAGGTTGCCTGTCAGGCATCAGGCTACCCACAGCCCCTGGTGGTCTGGAGAAAGATGCTCCAGCCTCGCGATGGTAAGCCTCAAGCACAGGTCCAGCTGGAAGGTGGGGCACCAGGCCTGGGCGGGCATGCCACCCGTGACACCGGCAGCGGCATGCTCTTCCTCACCAACATCACACTGGCTCACGCAGGCAAGTACGAATGCGAGGCCACCAATGCTGGTGGCAAAGCGCGGGTGCTCTTCCATCTACTGGTCAACGCATCCCGGCAGCAGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016204-'6-12,'6-9,7-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.312
Domain overlap (PFAM):
C1:
PF138551=LRR_8=WD(100=65.6),PF138551=LRR_8=PU(0.1=0.0)
A:
PF138551=LRR_8=FE(93.3=100)
C2:
PF138551=LRR_8=PD(3.3=0.6),PF0767911=I-set=WD(100=33.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGACACCTCTACCTGCATA
R:
CAAGAGCCCAACCAGTGAAGG
Band lengths:
258-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]