DreEX6029364 @ danRer10
Exon Skipping
Gene
ENSDARG00000101704 | lrrc24
Description
leucine rich repeat containing 24 [Source:ZFIN;Acc:ZDB-GENE-060503-496]
Coordinates
chr2:51457758-51464839:+
Coord C1 exon
chr2:51457758-51458036
Coord A exon
chr2:51461271-51461439
Coord C2 exon
chr2:51464528-51464839
Length
169 bp
Sequences
Splice sites
3' ss Seq
TGTTAATGCACTGTTTGCAGCGG
3' ss Score
6.14
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
ACCATTTTTCTGCAGGACAATGCCATCGGTCAGATCCGCCAACGGGACCTGTCTGACCTGGGCCAGCTACACTACCTCTACCTGCAGAACAACAGCATCAGCACGCTGGAGCCCGGGGCCTTCAGGAGCCTCGGTCTGCTTCTGGAGCTGGCTCTCAACGGGAACCGCATTCACCTGATCACGGCAGACGTATTTCGGGGCCTCGATCACCTGCGCATCTTGTACCTTGCAGGAAACCAAATCAACAGACTGGAGGATTACACCTTCCGCGGACTGCAG
Seq A exon
CGGCTGCAGGAGCTTCATCTGCAGGAGAATGTGCTGGAGGTGCTGGGAGATCAGGCTCTGGTGGGACTGTCCTCGCTGGCTCTTCTGGACCTCAGCCGAAATAACCTGAGAACTCTGAGTCCCGCTTCACTGAAGCCTCTGGTCAGCCTGCAGGTGCTGAGAGTCACTG
Seq C2 exon
ATAACCCATGGCGCTGCGACTGCGCTCTACACTGGCTGCGTGGCTGGATAAACGAAGAAGGTCAGAGGCTTTTAAGCTCAGCCGAGCGCCGGATGTTGTGCGCCGAACCTCCGCGGCTTTCCCACCTCAGTCTGGTCGAAGTTCCTCCAAACAGCCTTGTTTGCATCCCACCCGTGGTCCAACTAGAACCCAGCCATTTGACAGTACGTTTAGGGGAGAGTCTCCGAGTGTCCTGCCAAGCGTCCGGATACCCACAACCACAAGTCACCTGGAGGAAAGCGTCTCACGGAAAAGCCCAGCTGTCTCCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101704-'2-5,'2-3,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.205
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(91.8=60.2),PF138551=LRR_8=PU(0.1=0.0)
A:
PF138551=LRR_8=PU(93.3=98.2)
C2:
PF138551=LRR_8=PD(3.3=1.9),PF0767911=I-set=PU(42.0=44.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAACAACAGCATCAGCA
R:
TCTTCGTTTATCCAGCCACGC
Band lengths:
255-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]