HsaEX6083048 @ hg38
Exon Skipping
Gene
ENSG00000254402 | LRRC24
Description
leucine rich repeat containing 24 [Source:HGNC Symbol;Acc:HGNC:28947]
Coordinates
chr8:144522377-144524719:-
Coord C1 exon
chr8:144524441-144524719
Coord A exon
chr8:144524110-144524278
Coord C2 exon
chr8:144522377-144523409
Length
169 bp
Sequences
Splice sites
3' ss Seq
ATCTGCTGTCCTTACTTCAGCGA
3' ss Score
7.57
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
ACACTGTTCCTGCAGGACAACAACATCGCCCGCCTAGAGCCGGGAGCCCTGGCGCCACTCGCCGCTCTGCGCCGGCTCTACCTGCACAACAACAGCCTGCGCGCCCTGGAGGCCGGCGCCTTCCGCGCGCAGCCGCGCCTGCTGGAGCTGGCGCTCACTAGCAACCGGCTGCGCGGCTTGCGCAGCGGCGCCTTCGTAGGCCTGGCCCAGCTGCGCGTGCTCTACCTGGCGGGCAACCAGCTGGCGCGGCTGCTGGATTTCACCTTCTTGCACCTGCCG
Seq A exon
CGACTGCAGGAGCTTCACCTGCAAGAAAACAGCATTGAGCTGCTGGAGGACCAGGCTCTAGCGGGGCTGTCCTCCCTAGCACTGCTGGACCTCAGCAGGAACCAGCTGGGCACCATCAGCCGAGAGGCCCTGCAGCCCCTGGCCAGTCTGCAAGTCCTGCGCCTCACAG
Seq C2 exon
AGAACCCATGGCGCTGTGACTGCGCCCTGCACTGGCTGGGTGCCTGGATCAAGGAGGGCGGCCAGCGGCTGCTCACCTCCAGGGACAGGAAGATCATGTGTGCAGAGCCCCCGCGCCTGGCGCTCCAGAGTCTCCTGGACGTATCCCACAGCAGCCTCATCTGCATTCCGCCCTCTGTCCACGTGCAGCCGCTGGAGCTCACAGCCAACCTGGGTGAGGACCTGCGGGTTGCCTGCCAAGCCTCCGGCTACCCGCAGCCATTGGTGACCTGGAGAAAGGTGCCCCAGCCTCGCGAGGGCCGGCCGCGAGCCCAGGCCCAGCTAGAAGGCGGGTTGCTGGGCCTGGGCGGACACTCGGCATCCGACACGGGCAGCGGCATGCTCTTCCTCAGCAACATCACGCTGGCGCACGCCGGTAAGTACGAGTGCGAGGCCTCCAACGCCGGCGGCGCTGCCCGCGTGCCCTTCCGGCTCCTGGTCAACGCGTCCCGGCAGCAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000254402-'5-8,'5-5,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.293
Domain overlap (PFAM):
C1:
PF138551=LRR_8=WD(100=65.6),PF138551=LRR_8=PU(0.1=0.0)
A:
PF138551=LRR_8=FE(93.3=100)
C2:
PF138551=LRR_8=PD(3.3=0.6),PF0767911=I-set=WD(100=33.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGCACAACAACAGCCTG
R:
CTCCTTGATCCAGGCACCCAG
Band lengths:
257-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains