BtaEX0020627 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004970 | LRRC24
Description
Bos taurus leucine rich repeat containing 24 (LRRC24), mRNA. [Source:RefSeq mRNA;Acc:NM_001083678]
Coordinates
chr14:1607194-1609477:+
Coord C1 exon
chr14:1607194-1607472
Coord A exon
chr14:1607619-1607787
Coord C2 exon
chr14:1608466-1609477
Length
169 bp
Sequences
Splice sites
3' ss Seq
ATAATCTGTCTCTACTTCAGCGA
3' ss Score
8.09
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
ACGCTGTTCCTGCAGGACAACAGCATCGCGCGCCTGGAGCCGGGCATCCTGGCGCCCCTCGCCTCCCTGCGCCATCTCTACCTGCACAACAACAGCCTACACGCCCTGGAGTCGGGCGCCTTCCGCACGCAGTCGCGCCTGCTGGAACTGGCGCTCACTGGCAACCGGCTGCGCGGCTTGCGCGTCGGTGCTTTCGCAGGCCTGGCCCAACTGCGCGTGCTCTACCTAGCTGGCAACCAGCTGGTACAGCTGCTGGATTTCACCTTCCTACACTTGCAG
Seq A exon
CGACTGCAGGAGCTGCACCTGCAGGAAAACAGCATTGAGCTGCTGGAGGACCAGGCCCTGGCTGGGCTCTCCTCACTGGCACTGCTGGACCTCAGCAGGAACCAGCTGGGCACCATCAGCCGGGAGGCCCTGCAGCCACTGGCCAGCCTGCAGGTCCTGCGCCTCACAG
Seq C2 exon
AGAACCCATGGCGCTGTGACTGTGCCCTGCACTGGCTGGGAGCCTGGATCAAGGAGGGAGGCCAGCGACTGCTCAGCTCCAGGGACAAGAAGATCCTGTGTGCAGAGCCCCCGCGCCTGGCACTTCAGAGTCTCCTGGAAGTATCTGGAAGTAGCCTCATCTGCATCCCACCGTCTGTGCACGTGGAGCCGCTGGAGGTGACAGCCAACCTGGGTGAGGACCTGCGGGTGGCCTGCCAGGCTTCAGGTTACCCGCAGCCCCTGGTGACCTGGAGAAAGGTGGCACAGCCTCGCGAGGGTGCACCTCGCGCCCAGGCGCAGCCGGAAGTTGGGTGGCGGGGCACAGGAGGTCTCGGGGCCTCCGACACCGGCAGCGGCATGCTCTTCCTCACCAACATCACCCTGGCCCACGCCGGAAAGTACGAGTGTGAGGCCTCCAACGCCGGAGGCGCCGCCCGAGTACCCTTCCAGCTCTTGGTCAACGTGTCCCGGCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004970-'5-11,'5-7,6-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.236
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(90.2=49.5),PF127992=LRR_4=WD(100=50.5),PF138551=LRR_8=PU(0.1=0.0)
A:
PF138551=LRR_8=FE(93.3=100)
C2:
PF138551=LRR_8=PD(3.3=0.7),PF0767911=I-set=WD(100=33.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCACAACAACAGCCTACA
R:
CTCCTTGATCCAGGCTCCCAG
Band lengths:
255-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development