MmuEX6054637 @ mm10
Exon Skipping
Gene
ENSMUSG00000033707 | Lrrc24
Description
leucine rich repeat containing 24 [Source:MGI Symbol;Acc:MGI:3605040]
Coordinates
chr15:76715276-76718500:-
Coord C1 exon
chr15:76718222-76718500
Coord A exon
chr15:76717923-76718082
Coord C2 exon
chr15:76715276-76716306
Length
160 bp
Sequences
Splice sites
3' ss Seq
CGGTACTTCAGCGACTACAGGAA
3' ss Score
-3.62
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
ACACTGTTCCTGCAAGACAACAGCATCGCGCACCTGGAGCAAGGCTCCCTGGCACCTCTTGCTGCCCTGCGCCACCTCTACCTGCACAACAATACCCTGCGTGCGCTGGAGTCCGGTGCCTTCCGCGCACAGCCTCGCCTGCTTGAACTGGCGCTCACTGGCAACCGGCTTCGGGGATTGCGTGGCGGCGCATTTGTGGGCTTGGTCCAGCTTCGTGTGCTTTACCTGGCTGGAAACCAGCTGGCAAAGCTGCTGGATTTCACCTTCTTGCACCTGCCG
Seq A exon
GAACTTCATCTTCAAGAAAACAGCATTGAATTACTGGAGGACCAGGCCCTGGCTGGGCTTTCCTCCTTAGCCCTACTGGACCTCAGCAGGAACCAACTGGGCACCATCAGCAAGGAGGCCCTGCAGCCTCTGAGCAGCCTACAAGTGCTACGCCTCACAG
Seq C2 exon
AGAACCCATGGCGTTGTGACTGTGCCCTTCACTGGCTGGGCTCTTGGATCAAAGAGGGGGGCCGACGGCTTCTGAGCTCCAGAGACAAGAAGATCACATGTGCAGAGCCCCCACGCCTGGCGCTACAGAGTCTACTAGAAGTATCTGGTGGTAGCCTCATCTGCATTCCCCCCTCTGTGAACGTGGAGCCCCCGGAGTTTACAGCTAATCTGGGGGAGGACCTGCAGGTCGCCTGTCAGGCATCAGGCTACCCACAGCCCCTGGTGGTCTGGAGAAAGGTGCCCCAGCCTCGCGATGGTAAGCCTCAAGCCCAGGCCCAGCTGGAAGGTGGGGCGCCAGGCTTGGGCGGGCACGGCACCCGAGATACTGGCAGCGGCATGCTCTTCCTCACCAACATCACACTGGCTCACGCAGGCAAGTACGAATGCGAGGCCGCCAATGCAGGTGGCAAAGCTCGAGTGCCCTTTCATCTACTGGTCAACGCATCTCGGCAGCAGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033707-'14-22,'14-21,15-22
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.331
Domain overlap (PFAM):
C1:
PF138551=LRR_8=WD(100=63.4),PF138551=LRR_8=PU(0.1=0.0)
A:
PF138551=LRR_8=FE(93.3=100)
C2:
PF138551=LRR_8=PD(3.3=0.6),PF0767911=I-set=WD(100=33.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGCTGCTGGATTTCACC
R:
GTCCTCCCCCAGATTAGCTGT
Band lengths:
257-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types