HsaEX6083048 @ hg19
Exon Skipping
Gene
ENSG00000177021 | LRRC24
Description
NA
Coordinates
chr8:145747773-145750103:-
Coord C1 exon
chr8:145749825-145750103
Coord A exon
chr8:145749494-145749662
Coord C2 exon
chr8:145747773-145748793
Length
169 bp
Sequences
Splice sites
3' ss Seq
ATCTGCTGTCCTTACTTCAGCGA
3' ss Score
7.57
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
ACACTGTTCCTGCAGGACAACAACATCGCCCGCCTAGAGCCGGGAGCCCTGGCGCCACTCGCCGCTCTGCGCCGGCTCTACCTGCACAACAACAGCCTGCGCGCCCTGGAGGCCGGCGCCTTCCGCGCGCAGCCGCGCCTGCTGGAGCTGGCGCTCACTAGCAACCGGCTGCGCGGCTTGCGCAGCGGCGCCTTCGTAGGCCTGGCCCAGCTGCGCGTGCTCTACCTGGCGGGCAACCAGCTGGCGCGGCTGCTGGATTTCACCTTCTTGCACCTGCCG
Seq A exon
CGACTGCAGGAGCTTCACCTGCAAGAAAACAGCATTGAGCTGCTGGAGGACCAGGCTCTAGCGGGGCTGTCCTCCCTAGCACTGCTGGACCTCAGCAGGAACCAGCTGGGCACCATCAGCCGAGAGGCCCTGCAGCCCCTGGCCAGTCTGCAAGTCCTGCGCCTCACAG
Seq C2 exon
AGAACCCATGGCGCTGTGACTGCGCCCTGCACTGGCTGGGTGCCTGGATCAAGGAGGGCGGCCAGCGGCTGCTCACCTCCAGGGACAGGAAGATCATGTGTGCAGAGCCCCCGCGCCTGGCGCTCCAGAGTCTCCTGGACGTATCCCACAGCAGCCTCATCTGCATTCCGCCCTCTGTCCACGTGCAGCCGCTGGAGCTCACAGCCAACCTGGGTGAGGACCTGCGGGTTGCCTGCCAAGCCTCCGGCTACCCGCAGCCATTGGTGACCTGGAGAAAGGTGCCCCAGCCTCGCGAGGGCCGGCCGCGAGCCCAGGCCCAGCTAGAAGGCGGGTTGCTGGGCCTGGGCGGACACTCGGCATCCGACACGGGCAGCGGCATGCTCTTCCTCAGCAACATCACGCTGGCGCACGCCGGTAAGTACGAGTGCGAGGCCTCCAACGCCGGCGGCGCTGCCCGCGTGCCCTTCCGGCTCCTGGTCAACGCGTCCCGGCAGCAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177021-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.293
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGCACAACAACAGCCTG
R:
CTCCTTGATCCAGGCACCCAG
Band lengths:
257-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)