RnoEX6032936 @ rn6
Exon Skipping
Gene
ENSRNOG00000016204 | Lrrc24
Description
leucine rich repeat containing 24 [Source:RGD Symbol;Acc:1308720]
Coordinates
chr7:117782566-117783554:-
Coord C1 exon
chr7:117783307-117783554
Coord A exon
chr7:117782874-117783152
Coord C2 exon
chr7:117782566-117782734
Length
279 bp
Sequences
Splice sites
3' ss Seq
GTCGTCCCTACAACCTTTAGACG
3' ss Score
4.46
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
Exon sequences
Seq C1 exon
GAGGCGCATCCCATCCGGGTCCATTCTCTGGGGAAGCCACAGCTTCCTGGTGGGGCTCTTCGGAAATGGCCCCAGGACCCCCCGCGCTGCTGCTGCTACTGCTGGGTTTATTGCTGCTGCCGCTGCTGCCTGGACTCCCACCCCGCGCCACCGGCTGTCCCGCCGCCTGCCGCTGCTACAGCGCCACAGTGGAGTGTGGCGCCCTACGGTTGCGCGTGGTCCCACCGGGAATCCCTCCGGGGACGCAG
Seq A exon
ACGCTGTTCCTGCAAGACAACAGCATCGCGCACCTGGAGCAAGGCGCCCTGGCACCGCTTGCTGCCCTGCGACACCTCTACCTGCATAACAATACCCTGCGGGCGCTGGAGTCTGGCGCCTTTCGTGCACAGCCCCGCCTGCTTGAACTGGCGCTGACCGGCAACCGGCTTCGGGGATTGCGTGGCGGCGCCTTTGTGGGCCTGGTCCAGCTTCGAGTGCTTTACCTGGCTGGAAACCAGCTGGCGAAGCTGCTAGATTTCACCTTTTTGCACCTGCCG
Seq C2 exon
CGACTACAGGAACTTCATCTTCAAGAAAACAGCATTGAATTACTGGAAGACCAGGCCCTGGCTGGGCTTTCCTCCCTGGCCCTACTGGACCTCAGCAGGAACCAACTGGGCACCATCAGCAAGGAGGCCCTGCAGCCTCTGAGCAGCCTACAAGTGCTACGCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016204-'5-9,'5-8,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF138551=LRR_8=WD(100=65.6),PF138551=LRR_8=PU(0.1=0.0)
C2:
PF138551=LRR_8=FE(93.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTGGGTTTATTGCTGCT
R:
GCACTTGTAGGCTGCTCAGAG
Band lengths:
308-587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]