HsaEX6083047 @ hg19
Exon Skipping
Gene
ENSG00000177021 | LRRC24
Description
NA
Coordinates
chr8:145749494-145750417:-
Coord C1 exon
chr8:145750200-145750417
Coord A exon
chr8:145749825-145750103
Coord C2 exon
chr8:145749494-145749662
Length
279 bp
Sequences
Splice sites
3' ss Seq
CCTCTTTCCCCGGCCTGCAGACA
3' ss Score
8.77
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GAGGGCACGCGTCTGCGGCTGAACCGCGGAAGGGCCGGTGAGGAACCGGGCCTCGGGAGATGGCCCTGAGGGCCCCCGCACTGCTGCCGCTGCTGCTGCTACTACTGCCGCTCCGCGCCGCCGGCTGCCCAGCAGCCTGCCGCTGCTACAGCGCCACGGTGGAGTGTGGCGCCCTGCGGTTGCGCGTCGTCCCGCTGGGAATCCCGCCAGGGACGCAG
Seq A exon
ACACTGTTCCTGCAGGACAACAACATCGCCCGCCTAGAGCCGGGAGCCCTGGCGCCACTCGCCGCTCTGCGCCGGCTCTACCTGCACAACAACAGCCTGCGCGCCCTGGAGGCCGGCGCCTTCCGCGCGCAGCCGCGCCTGCTGGAGCTGGCGCTCACTAGCAACCGGCTGCGCGGCTTGCGCAGCGGCGCCTTCGTAGGCCTGGCCCAGCTGCGCGTGCTCTACCTGGCGGGCAACCAGCTGGCGCGGCTGCTGGATTTCACCTTCTTGCACCTGCCG
Seq C2 exon
CGACTGCAGGAGCTTCACCTGCAAGAAAACAGCATTGAGCTGCTGGAGGACCAGGCTCTAGCGGGGCTGTCCTCCCTAGCACTGCTGGACCTCAGCAGGAACCAGCTGGGCACCATCAGCCGAGAGGCCCTGCAGCCCCTGGCCAGTCTGCAAGTCCTGCGCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177021-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGCTGCTGCTACTACTG
R:
CTGTGAGGCGCAGGACTTG
Band lengths:
300-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)