DreEX0043810 @ danRer10
Exon Skipping
Gene
ENSDARG00000101704 | lrrc24
Description
leucine rich repeat containing 24 [Source:ZFIN;Acc:ZDB-GENE-060503-496]
Coordinates
chr2:51449101-51461439:+
Coord C1 exon
chr2:51449101-51449196
Coord A exon
chr2:51457758-51458036
Coord C2 exon
chr2:51461271-51461439
Length
279 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTGTGTGTTGTTCAGACC
3' ss Score
8.71
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GCTTGTCCTTCCGGGTGTCGCTGCTATAGTTTGACTGTCGAATGCGGATCCATCGGAATCAAAGAGATCCCACAAGGCATCACACAAGGGACGCAG
Seq A exon
ACCATTTTTCTGCAGGACAATGCCATCGGTCAGATCCGCCAACGGGACCTGTCTGACCTGGGCCAGCTACACTACCTCTACCTGCAGAACAACAGCATCAGCACGCTGGAGCCCGGGGCCTTCAGGAGCCTCGGTCTGCTTCTGGAGCTGGCTCTCAACGGGAACCGCATTCACCTGATCACGGCAGACGTATTTCGGGGCCTCGATCACCTGCGCATCTTGTACCTTGCAGGAAACCAAATCAACAGACTGGAGGATTACACCTTCCGCGGACTGCAG
Seq C2 exon
CGGCTGCAGGAGCTTCATCTGCAGGAGAATGTGCTGGAGGTGCTGGGAGATCAGGCTCTGGTGGGACTGTCCTCGCTGGCTCTTCTGGACCTCAGCCGAAATAACCTGAGAACTCTGAGTCCCGCTTCACTGAAGCCTCTGGTCAGCCTGCAGGTGCTGAGAGTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101704-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=84.4),PF138551=LRR_8=PU(4.9=9.4)
A:
PF138551=LRR_8=PD(91.8=60.2),PF138551=LRR_8=PU(0.1=0.0)
C2:
PF138551=LRR_8=PU(93.3=98.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTCCTTCCGGGTGTC
R:
AGTGACTCTCAGCACCTGCAG
Band lengths:
264-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]