HsaEX6083047 @ hg38
Exon Skipping
Gene
ENSG00000254402 | LRRC24
Description
leucine rich repeat containing 24 [Source:HGNC Symbol;Acc:HGNC:28947]
Coordinates
chr8:144524110-144525033:-
Coord C1 exon
chr8:144524816-144525033
Coord A exon
chr8:144524441-144524719
Coord C2 exon
chr8:144524110-144524278
Length
279 bp
Sequences
Splice sites
3' ss Seq
CCTCTTTCCCCGGCCTGCAGACA
3' ss Score
8.77
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GAGGGCACGCGTCTGCGGCTGAACCGCGGAAGGGCCGGTGAGGAACCGGGCCTCGGGAGATGGCCCTGAGGGCCCCCGCACTGCTGCCGCTGCTGCTGCTACTACTGCCGCTCCGCGCCGCCGGCTGCCCAGCAGCCTGCCGCTGCTACAGCGCCACGGTGGAGTGTGGCGCCCTGCGGTTGCGCGTCGTCCCGCTGGGAATCCCGCCAGGGACGCAG
Seq A exon
ACACTGTTCCTGCAGGACAACAACATCGCCCGCCTAGAGCCGGGAGCCCTGGCGCCACTCGCCGCTCTGCGCCGGCTCTACCTGCACAACAACAGCCTGCGCGCCCTGGAGGCCGGCGCCTTCCGCGCGCAGCCGCGCCTGCTGGAGCTGGCGCTCACTAGCAACCGGCTGCGCGGCTTGCGCAGCGGCGCCTTCGTAGGCCTGGCCCAGCTGCGCGTGCTCTACCTGGCGGGCAACCAGCTGGCGCGGCTGCTGGATTTCACCTTCTTGCACCTGCCG
Seq C2 exon
CGACTGCAGGAGCTTCACCTGCAAGAAAACAGCATTGAGCTGCTGGAGGACCAGGCTCTAGCGGGGCTGTCCTCCCTAGCACTGCTGGACCTCAGCAGGAACCAGCTGGGCACCATCAGCCGAGAGGCCCTGCAGCCCCTGGCCAGTCTGCAAGTCCTGCGCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000254402-'4-5,'4-3,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF138551=LRR_8=WD(100=65.6),PF138551=LRR_8=PU(0.1=0.0)
C2:
PF138551=LRR_8=FE(93.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGCTGCTGCTACTACTG
R:
CTGTGAGGCGCAGGACTTG
Band lengths:
300-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains