RnoALTA0022635-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000033090 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:RGD Symbol;Acc:68379]
Coordinates
chr6:21232580-21555625:-
Coord C1 exon
chr6:21555525-21555625
Coord A exon
chr6:21232664-21232720
Coord C2 exon
chr6:21232580-21232663
Length
57 bp
Sequences
Splice sites
5' ss Seq
AAAGCAAGA
5' ss Score
-0.84
3' ss Seq
TAATTTTCTCTTCTCTTAAGATA
3' ss Score
6.86
Exon sequences
Seq C1 exon
TAGAGCGCTTGCCTAACAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Seq A exon
ATATGGATGAATGCCAAGACCCTAACAGTTGTATCGATGGCCAGTGTGTTAATACAG
Seq C2 exon
AGGGCTCTTACAACTGCTTTTGCACCCACCCAATGGTCCTGGATGCCTCTGAGAAGAGATGTGTGCAGCCAACTGAATCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033090-3-43,3-42-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.021
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0764510=EGF_CA=WD(100=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGTCCCCAGCTCCAAAAA
R:
CAGTTGGCTGCACACATCTCT
Band lengths:
142-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]