RnoALTA0022644-2/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000020813 | Ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:RGD Symbol;Acc:62057]
Coordinates
chr1:221103256-221103940:+
Coord C1 exon
chr1:221103256-221103585
Coord A exon
chr1:221103789-221103799
Coord C2 exon
chr1:221103800-221103940
Length
11 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
TGTCCATCACCCTCCTGAAGCTT
3' ss Score
5.07
Exon sequences
Seq C1 exon
TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCCTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCCGCAGGAACTGGAGCCGGCACCGGCAGTTCAGGCCCCGGACTGGCCCGGACCGGAGCCATGTCCACAGGCCCGCTGCCGCCCCTTGTCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTATGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCAGCAGAAG
Seq A exon
CTTCCGTTCAG
Seq C2 exon
GTGCACCGCATCGAGGGGCCGAATGCTGAAGGTCCAGCCTCCTCCCAGCACCTGCTGCCGCATCCCAAGCCCCCGCACCCGAGGCCACCCACCCAAAAACCACTGGGCCGCTGCTTCCAGGACACACTGCCCAAGCAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020813-2-5,2-4,2-3,2-2-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.595 A=NA C2=0.882
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=24.3)
A:
NA
C2:
PF0068312=TB=PU(2.3=1.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCCTCCTGCACAACATG
R:
CTGGACCTTCAGCATTCGGC
Band lengths:
102-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]