RnoEX0051394 @ rn6
Exon Skipping
Gene
ENSRNOG00000020813 | Ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:RGD Symbol;Acc:62057]
Coordinates
chr1:221099998-221103940:+
Coord C1 exon
chr1:221099998-221100498
Coord A exon
chr1:221103256-221103585
Coord C2 exon
chr1:221103738-221103940
Length
330 bp
Sequences
Splice sites
3' ss Seq
GACCCCTGTCTCCTCCCTAGTGG
3' ss Score
8.43
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
CCCTCAGTGCAGCTTCCATCGCTCTCCCTCGCAACCGAGATCCCGGCCGCTCCTGCTGTCCCCTCCCTGCCCTTGGCTTCTGGCCCCGCTCAGCCCTCTGCAGCCCTCTCCCGGGCTCCCAACACTCGATCCCCTGCTCGGGCTCCACCCCCGATCTCCGAGGGTCGTGCGGCCCCGGATGCCCGGGCCCCGAGGGGCTGCCCGCGGCCTGGCCCCTGCGATGCGCCAGGCGGGGGCATCGGGGCTGCTGGCGCTACTGCTGCTGGCGCTGCTGGGCCCCGGCGGCGGGGCGGAGGGGGGGCCGGCCGGCGAGCGGGGCACAGGCGGGGGCGGGGCGCTGGCCCGCGAACGCTTCAAGGTGGTCTTTGCGCCGGTGATCTGCAAGCGGACCTGTCTGAAGGGCCAGTGTCGGGACAGCTGTCAGCAGGGCTCCAATATGACGCTCATCGGAGAGAACGGCCACAGCACCGACACGCTCACCGGTTCTGGCTTCCGCGTGG
Seq A exon
TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCCTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCCGCAGGAACTGGAGCCGGCACCGGCAGTTCAGGCCCCGGACTGGCCCGGACCGGAGCCATGTCCACAGGCCCGCTGCCGCCCCTTGTCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTATGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCAGCAGAAG
Seq C2 exon
TGCAGGCTCCGCCCCCTGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAATGCTGAAGGTCCAGCCTCCTCCCAGCACCTGCTGCCGCATCCCAAGCCCCCGCACCCGAGGCCACCCACCCAAAAACCACTGGGCCGCTGCTTCCAGGACACACTGCCCAAGCAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020813_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.315 A=0.595 C2=0.882
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=24.3)
C2:
PF0068312=TB=PU(2.3=1.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAACGCTTCAAGGTGGTCTT
R:
CAGTGTGTCCTGGAAGCAGC
Band lengths:
346-676
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]