DreEX6012182 @ danRer10
Exon Skipping
Gene
ENSDARG00000035682 | ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-060526-130]
Coordinates
chr5:36917806-36952825:+
Coord C1 exon
chr5:36917806-36918302
Coord A exon
chr5:36952427-36952575
Coord C2 exon
chr5:36952708-36952825
Length
149 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTCTGCAGTGG
3' ss Score
8.79
5' ss Seq
CAGGTGACG
5' ss Score
7.66
Exon sequences
Seq C1 exon
AACCGGACGTAAATTTTCAGGTTTCTAACTTGAAAAGTCACAGGAAGGCATCAGGAAAAAGTTTCTGCGCGAGGACTTTCATAGCCAGCTCTGCCTGGGAAAAGAGCGCGTGCTTGCGTACATTTTCCAAACTGGGCTCCAGCAAAACGTCTTCAGCGGTCGTGCCTGGAGGAACTGCCTGATCCGCACAGGCTTTACGTGGATATACTGTGGGTGGTAGCGTGAATGACCTGTGTTGGCATTGAGGGATGCCAGCATGCCCTCGCTGATTGTCTCGCATCTGCTCCTCATCTGGCTCGCGCTCCCGCGGCTGGCTCTGTGCGGCGAGCGCGCGTCAACCCGCGAGCGTTTCAAAGTGGTCATCGCGCCGCTCATCTGCAAACGGACATGCCTGAAGGGTCAGTGTCAGGACACCTGCGAGCAGGGCAACAACACCACTCTCATCGGTGAAAACGGACAGTCGGCGGACACACTGACCGGGCCTGGCTTCAGAGTCG
Seq A exon
TGGTGTGTCCTCTGACCTGTATGAATGGAGGAGTGTGCAGTACCCGCACACACTGTCTCTGTCCACCAGGCTTCACAGGACGCCTCTGCCAGTACCCACTTCGAACTCAAGCTACTCGTGGCAACAAGCAGCCTGTGTACACTGTGCAG
Seq C2 exon
GTGGTGCCAGGTGAGTCTCAGAGTCTGTCTGAGTCTATCGGTGCAGGTGGACGACAGCAGATGACACAAACACACTCTGTGTTCACTCTGCAAGGCACTGGACATCACTCTTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035682-'1-3,'1-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.160 C2=0.700
Domain overlap (PFAM):
C1:
NO
A:
PF126612=hEGF=WD(100=26.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCAAAGTGGTCATCGCGC
R:
TGCCTTGCAGAGTGAACACAG
Band lengths:
247-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]